Version 5.4
Mus musculus Gene: Smtn
Summary
InnateDB Gene IDBG-140007.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Smtn
Gene Name smoothelin
Synonyms smsmo
Species Mus musculus
Ensembl Gene ENSMUSG00000020439
Encoded Proteins
IDBP-140009
smoothelin
IDBP-140011
smoothelin
IDBP-140013
smoothelin
IDBP-261169
smoothelin
IDBP-532899
smoothelin
IDBP-532184
smoothelin
IDBP-625005
smoothelin
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000183963:
This gene encodes a structural protein that is found exclusively in contractile smooth muscle cells. It associates with stress fibers and constitutes part of the cytoskeleton. This gene is localized to chromosome 22q12.3, distal to the TUPLE1 locus and outside the DiGeorge syndrome deletion. Alternative splicing of this gene results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, May 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 11:3517523-3540612
Strand Reverse strand
Band A1
Transcripts
ENSMUST00000020721 ENSMUSP00000020721
ENSMUST00000020718 ENSMUSP00000020718
ENSMUST00000075118 ENSMUSP00000074621
ENSMUST00000110011 ENSMUSP00000105638
ENSMUST00000154861
ENSMUST00000144635
ENSMUST00000156201 ENSMUSP00000118750
ENSMUST00000136243 ENSMUSP00000117307
ENSMUST00000151804
ENSMUST00000170588 ENSMUSP00000133155
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 6 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 6 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0015629 actin cytoskeleton
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000183963
View Gene Order
ENSBTAG00000003100
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.188516
RefSeq NM_001159284 NM_001284427 NM_001284428 NM_013870 XM_006514723
OMIM
CCDS CCDS24366 CCDS70129
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca