Version 5.4
Mus musculus Gene: Clrn1
Summary
InnateDB Gene IDBG-146585.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Clrn1
Gene Name clarin 1
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000043850
Encoded Proteins
IDBP-146587
clarin 1
IDBP-146589
clarin 1
IDBP-146591
clarin 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000163646:
This gene encodes a protein that contains a cytosolic N-terminus, multiple helical transmembrane domains, and an endoplasmic reticulum membrane retention signal, TKGH, in the C-terminus. The encoded protein may be important in development and homeostasis of the inner ear and retina. Mutations within this gene have been associated with Usher syndrome type IIIa. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:58844028-58885340
Strand Reverse strand
Band D
Transcripts
ENSMUST00000055636 ENSMUSP00000052254
ENSMUST00000051408 ENSMUSP00000051738
ENSMUST00000072551 ENSMUSP00000072363
ENSMUST00000161419
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0007015 actin filament organization
GO:0007601 visual perception
GO:0007605 sensory perception of sound
GO:0010592 positive regulation of lamellipodium assembly
GO:0048870 cell motility
GO:0050885 neuromuscular process controlling balance
GO:0050896 response to stimulus
GO:0060088 auditory receptor cell stereocilium organization
GO:0060117 auditory receptor cell development
Cellular Component
GO:0005886 plasma membrane
GO:0005902 microvillus
GO:0016021 integral component of membrane
GO:0030027 lamellipodium
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000163646
View Gene Order
ENSBTAG00000011267
Not yet available
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.131502
RefSeq NM_153384 NM_153385 NM_153386
OMIM
CCDS CCDS17369 CCDS38438 CCDS38439
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca