Version 5.4
Mus musculus Gene: Patl1
Summary
InnateDB Gene IDBG-147419.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Patl1
Gene Name protein associated with topoisomerase II homolog 1 (yeast)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000046139
Encoded Proteins
IDBP-147421
protein associated with topoisomerase II homolog 1 (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000166889:
Gene Information
Type Protein coding
Genomic Location Chromosome 19:11912399-11945096
Strand Forward strand
Band A
Transcripts
ENSMUST00000061618 ENSMUSP00000060398
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0002151 G-quadruplex RNA binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008266 poly(U) RNA binding
GO:0030371 translation repressor activity
GO:0034046 poly(G) binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0017148 negative regulation of translation
GO:0033962 cytoplasmic mRNA processing body assembly
Cellular Component
GO:0000932 cytoplasmic mRNA processing body
GO:0005737 cytoplasm
GO:0016605 PML body
GO:0016607 nuclear speck
GO:0030014 CCR4-NOT complex
GO:0043231 intracellular membrane-bounded organelle
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000166889
View Gene Order
ENSBTAG00000005913
Not yet available
Pathways
NETPATH
REACTOME
REACT_261877
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_233572
Gene Expression pathway
REACT_235784
Deadenylation-dependent mRNA decay pathway
KEGG
mmu03018
RNA degradation pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_20518
mRNA decay by 5' to 3' exoribonuclease pathway
REACT_20639
Deadenylation-dependent mRNA decay pathway
REACT_71
Gene Expression pathway
KEGG
hsa03018
RNA degradation pathway
INOH
PID NCI
Cross-References
SwissProt Q3TC46
TrEMBL
UniProt Splice Variant
Entrez Gene 225929
UniGene Mm.42711 Mm.470206
RefSeq NM_172635 XM_006526946
OMIM
CCDS CCDS37924
HPRD
IMGT
MGI ID MGI:2147679
MGI Symbol Patl1
EMBL AK085013 AK087559 AK150301 AK154102 AK170408 AK170745 AK170918 BC058941
GenPept AAH58941 BAC39337 BAC39927 BAE29453 BAE32378 BAE41774 BAE41998 BAE42111
RNA Seq Atlas 225929

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca