Version 5.4
Mus musculus Gene: Vti1b
Summary
InnateDB Gene IDBG-152720.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vti1b
Gene Name vesicle transport through interaction with t-SNAREs 1B homolog
Synonyms AU015348; GES30; MVti1b; SNARE; Vti1-rp1
Species Mus musculus
Ensembl Gene ENSMUSG00000021124
Encoded Proteins
IDBP-152722
vesicle transport through interaction with t-SNAREs 1B homolog
IDBP-536753
vesicle transport through interaction with t-SNAREs 1B homolog
IDBP-534123
vesicle transport through interaction with t-SNAREs 1B homolog
IDBP-534556
vesicle transport through interaction with t-SNAREs 1B homolog
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000100568:
Gene Information
Type Protein coding
Genomic Location Chromosome 12:79156017-79172667
Strand Reverse strand
Band C3
Transcripts
ENSMUST00000055262 ENSMUSP00000057462
ENSMUST00000162789 ENSMUSP00000124260
ENSMUST00000162569 ENSMUSP00000124741
ENSMUST00000163031 ENSMUSP00000124464
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000149 SNARE binding
GO:0005515 protein binding
Biological Process
GO:0006886 intracellular protein transport
GO:0016192 vesicle-mediated transport
Cellular Component
GO:0005765 lysosomal membrane
GO:0005794 Golgi apparatus
GO:0008021 synaptic vesicle
GO:0016020 membrane
GO:0031201 SNARE complex
GO:0031902 late endosome membrane
GO:0043025 neuronal cell body
GO:0048471 perinuclear region of cytoplasm
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000100568
View Gene Order
ENSBTAG00000001948
Not yet available
Pathways
NETPATH
REACTOME
KEGG
mmu04130
SNARE interactions in vesicular transport pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
hsa04130
SNARE interactions in vesicular transport pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL Q3TUP8 Q91XH6
UniProt Splice Variant
Entrez Gene 53612
UniGene
RefSeq NM_016800 XM_006516088
OMIM
CCDS CCDS26008
HPRD
IMGT
MGI ID MGI:1855688
MGI Symbol Vti1b
EMBL AC154585 AK160624 BC009810 BC080204 CH466590
GenPept AAH09810 AAH80204 BAE35923 EDL02641
RNA Seq Atlas 53612

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca