Version 5.4
Mus musculus Gene: Def6
Summary
InnateDB Gene IDBG-158004.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Def6
Gene Name differentially expressed in FDCP 6
Synonyms 2410003F05Rik; 6430538D02Rik; AV094905; Ibp; Slat; Slat2; Slat6
Species Mus musculus
Ensembl Gene ENSMUSG00000002257
Encoded Proteins
IDBP-158006
differentially expressed in FDCP 6
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000023892:
DEF6, or IBP, is a guanine nucleotide exchange factor (GEF) for RAC (MIM 602048) and CDC42 (MIM 116952) that is highly expressed in B and T cells (Gupta et al., 2003 [PubMed 12923183]).[supplied by OMIM, Mar 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 17:28207778-28228608
Strand Forward strand
Band A3.3
Transcripts
ENSMUST00000002327 ENSMUSP00000002327
ENSMUST00000146724
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 7 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 7 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0016020 membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000023892
View Gene Order
ENSBTAG00000025622
Not yet available
Pathway Predictions based on Human Orthology Data
NETPATH
NetPath_11
TCR pathway
REACTOME
KEGG
INOH
PID NCI
rac1_reg_pathway
Regulation of RAC1 activity
rhoa_reg_pathway
Regulation of RhoA activity
Cross-References
SwissProt Q8C2K1
TrEMBL
UniProt Splice Variant
Entrez Gene 23853
UniGene Mm.204731
RefSeq NM_027185
OMIM
CCDS CCDS28574
HPRD
IMGT
MGI ID MGI:1346328
MGI Symbol Def6
EMBL AF329497 AK010356 AK038050 AK088460 AY241695 AY278770 BC120500 BC131953 CT009658
GenPept AAI20501 AAI31954 AAO67354 AAO91768 AAQ19048 BAB26876 BAC40366 BAE20528 CAQ51695
RNA Seq Atlas 23853

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca