Version 5.4
Mus musculus Gene: Sugp1
Summary
InnateDB Gene IDBG-161430.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Sugp1
Gene Name SURP and G patch domain containing 1
Synonyms 5730496N02Rik; Sf4
Species Mus musculus
Ensembl Gene ENSMUSG00000011306
Encoded Proteins
IDBP-161432
SURP and G patch domain containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000105705:
SF4 is a member of the SURP family of splicing factors.[supplied by OMIM, Sep 2003]
Gene Information
Type Protein coding
Genomic Location Chromosome 8:70042813-70071953
Strand Forward strand
Band B3.3
Transcripts
ENSMUST00000011450 ENSMUSP00000011450
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
They are also associated with 41 interaction(s) predicted by orthology.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 41 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005681 spliceosomal complex
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000105705
View Gene Order
ENSBTAG00000006116
Not yet available
Pathways
NETPATH
REACTOME
REACT_249110
mRNA Splicing pathway
REACT_233572
Gene Expression pathway
REACT_260226
mRNA Splicing - Major Pathway pathway
REACT_233950
Processing of Capped Intron-Containing Pre-mRNA pathway
KEGG
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q8CH02
TrEMBL
UniProt Splice Variant
Entrez Gene 70616
UniGene
RefSeq NM_027481 XM_006509738
OMIM
CCDS CCDS22356
HPRD
IMGT
MGI ID MGI:1917866
MGI Symbol Sugp1
EMBL AF521129 AK156508 BC120919 BC120920
GenPept AAI20920 AAI20921 AAN77124 BAE33738
RNA Seq Atlas 70616

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca