Version 5.4
Mus musculus Gene: Pabpn1
Summary
InnateDB Gene IDBG-162347.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pabpn1
Gene Name poly(A) binding protein, nuclear 1
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000022194
Encoded Proteins
IDBP-162400
poly(A) binding protein, nuclear 1
IDBP-274033
poly(A) binding protein, nuclear 1
IDBP-542043
poly(A) binding protein, nuclear 1
IDBP-620204
poly(A) binding protein, nuclear 1
IDBP-542034
poly(A) binding protein, nuclear 1
IDBP-541821
poly(A) binding protein, nuclear 1
IDBP-620208
poly(A) binding protein, nuclear 1
IDBP-620205
poly(A) binding protein, nuclear 1
IDBP-620207
poly(A) binding protein, nuclear 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 14:54892500-54898169
Strand Forward strand
Band C2
Transcripts
ENSMUST00000022808 ENSMUSP00000022808
ENSMUST00000116476 ENSMUSP00000112177
ENSMUST00000140691 ENSMUSP00000115294
ENSMUST00000150975 ENSMUSP00000133937
ENSMUST00000141446 ENSMUSP00000123305
ENSMUST00000139985 ENSMUSP00000122432
ENSMUST00000146271 ENSMUSP00000133473
ENSMUST00000172695 ENSMUSP00000133579
ENSMUST00000172557 ENSMUSP00000133405
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0008143 poly(A) binding
Biological Process
GO:0006378 mRNA polyadenylation
GO:0043066 negative regulation of apoptotic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0030529 ribonucleoprotein complex
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
REACT_240247
mRNA 3'-end processing pathway
REACT_249110
mRNA Splicing pathway
REACT_248407
Processing of Capped Intronless Pre-mRNA pathway
REACT_232123
Processing of Intronless Pre-mRNAs pathway
REACT_257346
RNA Polymerase II Transcription Termination pathway
REACT_253727
Cleavage of Growing Transcript in the Termination Region pathway
REACT_233572
Gene Expression pathway
REACT_260226
mRNA Splicing - Major Pathway pathway
REACT_233950
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_242255
RNA Polymerase II Transcription pathway
KEGG
mmu03015
mRNA surveillance pathway pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Mm.7723
RefSeq NM_019402 XM_006519272
OMIM
CCDS CCDS27104
HPRD
IMGT
MGI ID
MGI Symbol
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca