Version 5.4
Mus musculus Gene: Pcdh11x
Summary
InnateDB Gene IDBG-169462.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pcdh11x
Gene Name protocadherin 11 X-linked
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000034755
Encoded Proteins
IDBP-169464
protocadherin 11 X-linked
IDBP-254063
protocadherin 11 X-linked
IDBP-254067
protocadherin 11 X-linked
IDBP-789664
protocadherin 11 X-linked
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene encodes a member of the protocadherin family, and cadherin superfamily, of transmembrane proteins containing cadherin domains. The encoded protein may mediate cell-cell adhesion in neuronal tissues in the presence of calcium. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Nov 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome X:120290259-120910619
Strand Forward strand
Band E2
Transcripts
ENSMUST00000050239 ENSMUSP00000052340
ENSMUST00000113364 ENSMUSP00000108991
ENSMUST00000113358 ENSMUSP00000108985
ENSMUST00000155223 ENSMUSP00000138407
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
Biological Process
GO:0007156 homophilic cell adhesion
Cellular Component
GO:0005575 cellular_component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000102290
View Gene Order
ENSBTAG00000001911
Not yet available
Cross-References
SwissProt
TrEMBL B1AZR7 B5AK95 Q2TJH6
UniProt Splice Variant
Entrez Gene 245578
UniGene Mm.39691 Mm.439552 Mm.490224
RefSeq NM_001271810 XM_006528389
OMIM
CCDS CCDS72426
HPRD
IMGT
MGI ID MGI:2442849
MGI Symbol Pcdh11x
EMBL AC115298 AC117258 AY861429 BX005163 BX005240 BX005446 BX255884 EU854474
GenPept AAX56119 ACF75932
RNA Seq Atlas 245578

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca