Version 5.4
Mus musculus Gene: Chd1l
Summary
InnateDB Gene IDBG-176882.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Chd1l
Gene Name chromodomain helicase DNA binding protein 1-like
Synonyms 4432404A22Rik; Alc1; Snf2p
Species Mus musculus
Ensembl Gene ENSMUSG00000028089
Encoded Proteins
IDBP-176884
chromodomain helicase DNA binding protein 1-like
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000131778:
This gene encodes a DNA helicase protein involved in DNA repair. The protein converts ATP to add poly(ADP-ribose) as it regulates chromatin relaxation following DNA damage. Several alternatively spliced transcripts variants have been described for this gene. [provided by RefSeq, Jan 2012]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:97560742-97610203
Strand Reverse strand
Band F2.2
Transcripts
ENSMUST00000029730 ENSMUSP00000029730
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 2 experimentally validated interaction(s) in this database.
They are also associated with 26 interaction(s) predicted by orthology.
Experimentally validated
Total 2 [view]
Protein-Protein 2 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 26 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATPase activity
Biological Process
GO:0006200 ATP catabolic process
GO:0006281 DNA repair
GO:0006338 chromatin remodeling
GO:0006974 cellular response to DNA damage stimulus
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005886 plasma membrane
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000131778
View Gene Order
ENSBTAG00000020831
Not yet available
Cross-References
SwissProt Q9CXF7
TrEMBL
UniProt Splice Variant
Entrez Gene 68058
UniGene
RefSeq NM_026539 XM_006501959
OMIM
CCDS CCDS38561
HPRD
IMGT
MGI ID MGI:1915308
MGI Symbol Chd1l
EMBL AK014473 AK165656 BC052385 BC057567 BC062966
GenPept AAH52385 AAH57567 AAH62966 BAB29376 BAE38319
RNA Seq Atlas 68058

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca