Version 5.4
Mus musculus Gene: Zkscan17
Summary
InnateDB Gene IDBG-178780.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Zkscan17
Gene Name zinc finger with KRAB and SCAN domains 17
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000020472
Encoded Proteins
IDBP-178782
zinc finger with KRAB and SCAN domains 17
IDBP-178784
zinc finger with KRAB and SCAN domains 17
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000162714:
Gene Information
Type Protein coding
Genomic Location Chromosome 11:59485520-59526751
Strand Reverse strand
Band B1.3
Transcripts
ENSMUST00000013262 ENSMUSP00000013262
ENSMUST00000101150 ENSMUSP00000098709
ENSMUST00000134522
ENSMUST00000139093
ENSMUST00000129941
ENSMUST00000139707
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 14 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 14 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
GO:0043621 protein self-association
GO:0046872 metal ion binding
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0045893 positive regulation of transcription, DNA-templated
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0016604 nuclear body
Orthologs
Species
Homo sapiens
Gene ID
Gene Order
ENSG00000162714
View Gene Order
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
REACT_12627
Generic Transcription Pathway pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt Q5SXI5
TrEMBL
UniProt Splice Variant
Entrez Gene 268417
UniGene Mm.239793
RefSeq NM_001291014 XM_006533387 NM_001130529 NM_172941 XM_006533384 XM_006533385 XM_006533386
OMIM
CCDS CCDS70197 CCDS24770
HPRD
IMGT
MGI ID MGI:2679270
MGI Symbol Zkscan17
EMBL AK051711 AK139346 AK155196 AK155490 AK170924 AK170989 AK171190 AL592522 AY302242 BC040205
GenPept AAH40205 AAQ73562 BAC34730 BAE23969 BAE33110 BAE33290 BAE42117 BAE42163 BAE42300 CAI24553 CAI24554
RNA Seq Atlas 268417

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca