Version 5.4
Mus musculus Gene: Cd53
Summary
InnateDB Gene IDBG-184902.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Cd53
Gene Name CD53 antigen
Synonyms AI323659; Ox-44; Tspan25
Species Mus musculus
Ensembl Gene ENSMUSG00000040747
Encoded Proteins
IDBP-184904
CD53 antigen
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
InnateDB Annotation from Orthologs
Summary
PMID 20407468
[Homo sapiens] CD53 is an important regulator of innate tumour necrosis factor (TNF)-alpha levels.
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000143119:
The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein that is known to complex with integrins. It contributes to the transduction of CD2-generated signals in T cells and natural killer cells and has been suggested to play a role in growth regulation. Familial deficiency of this gene has been linked to an immunodeficiency associated with recurrent infectious diseases caused by bacteria, fungi and viruses. Alternative splicing results in multiple transcript variants encoding the same protein. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:106758861-106790149
Strand Reverse strand
Band F2.3
Transcripts
ENSMUST00000038845 ENSMUSP00000035781
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 4 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 0
Protein-DNA 3 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 4 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
GO:1901741 positive regulation of myoblast fusion
Cellular Component
GO:0001772 immunological synapse
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0009986 cell surface
GO:0016021 integral component of membrane
GO:0070062 extracellular vesicular exosome
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000143119
View Gene Order
ENSBTAG00000006466
Not yet available
Cross-References
SwissProt Q61451
TrEMBL Q3U0W1
UniProt Splice Variant
Entrez Gene 12508
UniGene Mm.316861 Mm.469077
RefSeq NM_007651
OMIM
CCDS CCDS17728
HPRD
IMGT
MGI ID MGI:88341
MGI Symbol Cd53
EMBL AK156510 BC021310 BC052905 CH466607 X97227 Z16078
GenPept AAH21310 AAH52905 BAE33740 CAA65864 CAA78892 EDL01884
RNA Seq Atlas 12508

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca