Version 5.4
Mus musculus Gene: Vsx1
Summary
InnateDB Gene IDBG-209333.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Vsx1
Gene Name visual system homeobox 1 homolog (zebrafish)
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000033080
Encoded Proteins
IDBP-209335
visual system homeobox 1 homolog (zebrafish)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000100987:
The protein encoded by this gene contains a paired-like homeodomain and binds to the core of the locus control region of the red/green visual pigment gene cluster. The encoded protein may regulate expression of the cone opsin genes early in development. Mutations in this gene can cause posterior polymorphous corneal dystrophy and keratoconus. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:150680702-150689360
Strand Reverse strand
Band G3
Transcripts
ENSMUST00000046095 ENSMUSP00000039088
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0043565 sequence-specific DNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007601 visual perception
GO:0042551 neuron maturation
GO:0048666 neuron development
GO:0050896 response to stimulus
GO:0060040 retinal bipolar neuron differentiation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000100987
View Gene Order
ENSBTAG00000003335
Not yet available
Cross-References
SwissProt Q91V10
TrEMBL A2AQX5
UniProt Splice Variant
Entrez Gene 114889
UniGene Mm.207061
RefSeq NM_054068
OMIM
CCDS CCDS16860
HPRD
IMGT
MGI ID MGI:1890816
MGI Symbol Vsx1
EMBL AF391757 AF391758 AF395732 AY056825 BC057647 BC138456 BC138460
GenPept AAH57647 AAI38457 AAI38461 AAL08947 AAL09584 AAL09585 AAL11431
RNA Seq Atlas 114889

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca