Version 5.4
Homo sapiens Gene: PTCD1
Summary
InnateDB Gene IDBG-29139.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PTCD1
Gene Name pentatricopeptide repeat domain 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000106246
Encoded Proteins
IDBP-29141
pentatricopeptide repeat domain 1
IDBP-382825
pentatricopeptide repeat domain 1
IDBP-382826
pentatricopeptide repeat domain 1
IDBP-382829
pentatricopeptide repeat domain 1
IDBP-382833
pentatricopeptide repeat domain 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]
Gene Information
Type Protein coding
Genomic Location Chromosome 7:99416739-99466163
Strand Reverse strand
Band q22.1
Transcripts
ENST00000292478 ENSP00000292478
ENST00000430982 ENSP00000390530
ENST00000430029 ENSP00000408059
ENST00000419981 ENSP00000401600
ENST00000437572
ENST00000451138 ENSP00000416954
ENST00000485746
ENST00000482251
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 10 experimentally validated interaction(s) in this database.
Experimentally validated
Total 10 [view]
Protein-Protein 10 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000049 tRNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0042780 tRNA 3'-end processing
Cellular Component
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
Orthologs
No orthologs found for this gene
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.632313
RefSeq NM_001198879 NM_015545 NM_001081559 NM_006693
HUGO
OMIM
CCDS CCDS56496 CCDS34691 CCDS47652 CCDS5664
HPRD 11463
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca