Version 5.4
Homo sapiens Gene: LIMD1
Summary
InnateDB Gene IDBG-29603.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol LIMD1
Gene Name LIM domains containing 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000144791
Encoded Proteins
IDBP-29605
LIM domains containing 1
IDBP-374289
LIM domains containing 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 3:45555394-45686338
Strand Forward strand
Band p21.31
Transcripts
ENST00000273317 ENSP00000273317
ENST00000440097 ENSP00000394537
ENST00000465039
ENST00000474665
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 33 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 34 [view]
Protein-Protein 33 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
GO:0001666 response to hypoxia
GO:0002076 osteoblast development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007010 cytoskeleton organization
GO:0007165 signal transduction
GO:0007275 multicellular organismal development
GO:0008360 regulation of cell shape
GO:0016310 phosphorylation
GO:0016477 cell migration
GO:0033962 cytoplasmic mRNA processing body assembly
GO:0035195 gene silencing by miRNA
GO:0035331 negative regulation of hippo signaling
GO:0045668 negative regulation of osteoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:2000637 positive regulation of gene silencing by miRNA
Cellular Component
GO:0000932 cytoplasmic mRNA processing body
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005912 adherens junction
GO:0005925 focal adhesion
GO:0016442 RISC complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000025239
View Gene Order
ENSBTAG00000026097
Not yet available
Pathways
NETPATH
NetPath_4
EGFR1 pathway
REACTOME
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL
UniProt Splice Variant
Entrez Gene
UniGene Hs.193370 Hs.665096
RefSeq NM_014240 XM_005265529 XM_005265530 XM_006713381
HUGO
OMIM
CCDS CCDS2729
HPRD 05177
IMGT
EMBL
GenPept
RNA Seq Atlas

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca