Version 5.4
Homo sapiens Gene: PCDH17
Summary
InnateDB Gene IDBG-36343.5
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PCDH17
Gene Name protocadherin 17
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000118946
Encoded Proteins
IDBP-36349
protocadherin 17
IDBP-585449
protocadherin 17
IDBP-812154
protocadherin 17
IDBP-812157
protocadherin 17
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. The encoded protein contains six extracellular cadherin domains, a transmembrane domain, and a cytoplasmic tail differing from those of the classical cadherins. The encoded protein may play a role in the establishment and function of specific cell-cell connections in the brain. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 13:57631810-57729311
Strand Forward strand
Band q21.1
Transcripts
ENST00000377918 ENSP00000367151
ENST00000484979 ENSP00000432899
ENST00000612954 ENSP00000481329
ENST00000615375 ENSP00000483215
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 5 experimentally validated interaction(s) in this database.
Experimentally validated
Total 5 [view]
Protein-Protein 5 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
Biological Process
GO:0007156 homophilic cell adhesion
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000035566
View Gene Order
ENSBTAG00000010420
Not yet available
Cross-References
SwissProt O14917
TrEMBL
UniProt Splice Variant
Entrez Gene 27253
UniGene Hs.106511 Hs.713971 Hs.716117 Hs.732145
RefSeq NM_001040429 XM_005266357 XM_005266358
HUGO HGNC:14267
OMIM 611760
CCDS CCDS31986
HPRD
IMGT
EMBL AF029343 AK289980 AL445216 AL445288 BC028165 CH471124
GenPept AAB84144 AAH28165 BAF82669 CAH71250 CAI17092 EAW52060
RNA Seq Atlas 27253

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca