Version 5.4
Homo sapiens Gene: PRDM6
Summary
InnateDB Gene IDBG-39060.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRDM6
Gene Name PR domain containing 6
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000061455
Encoded Proteins
IDBP-293307
PR domain containing 6
IDBP-375337
PR domain containing 6
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 5:123089121-123194266
Strand Forward strand
Band q23.2
Transcripts
ENST00000407847 ENSP00000384725
ENST00000434521 ENSP00000390919
ENST00000427739
ENST00000464424
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 8 experimentally validated interaction(s) in this database.
Experimentally validated
Total 8 [view]
Protein-Protein 8 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0005515 protein binding
GO:0018024 histone-lysine N-methyltransferase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0022008 neurogenesis
GO:0034968 histone lysine methylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0051151 negative regulation of smooth muscle cell differentiation
Cellular Component
GO:0005634 nucleus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000069378
View Gene Order
ENSBTAG00000020578
Not yet available
Cross-References
SwissProt Q9NQX0
TrEMBL
UniProt Splice Variant
Entrez Gene 93166
UniGene Hs.135118
RefSeq NM_001136239 XM_005272128
HUGO HGNC:9350
OMIM
CCDS CCDS47259
HPRD
IMGT
EMBL AC008548 AC106786 AF272898 AF272899
GenPept AAF78078 AAF78079
RNA Seq Atlas 93166

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca