Version 5.4
Homo sapiens Gene: ZNF540
Summary
InnateDB Gene IDBG-47857.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol ZNF540
Gene Name zinc finger protein 540
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000171817
Encoded Proteins
IDBP-47859
zinc finger protein 540
IDBP-47863
zinc finger protein 540
IDBP-762602
IDBP-765878
IDBP-765359
IDBP-765574
IDBP-764645
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 19:37551406-37614097
Strand Forward strand
Band q13.12
Transcripts
ENST00000316433 ENSP00000324598
ENST00000343599 ENSP00000343768
ENST00000590588 ENSP00000467667
ENST00000586134 ENSP00000465503
ENST00000589117 ENSP00000467118
ENST00000587220
ENST00000592533 ENSP00000466274
ENST00000586792 ENSP00000468113
ENST00000589857
ENST00000589285
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0000900 translation repressor activity, nucleic acid binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 sequence-specific DNA binding transcription factor activity
GO:0005515 protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0017148 negative regulation of translation
GO:0045892 negative regulation of transcription, DNA-templated
Cellular Component
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0043231 intracellular membrane-bounded organelle
Orthologs
No orthologs found for this gene
Pathways
NETPATH
REACTOME
REACT_12627
Generic Transcription Pathway pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL K7EQ46
UniProt Splice Variant
Entrez Gene 163255
UniGene Hs.630905 Hs.728927
RefSeq NM_001172225 NM_001172226 NM_152606
HUGO HGNC:25331
OMIM 613903
CCDS CCDS12506 CCDS54258
HPRD 15827
IMGT
EMBL AC022148
GenPept
RNA Seq Atlas 163255

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca