Homo sapiens Gene: RBM17

Summary
InnateDB Gene IDBG-50666.5
Last Modified 2012-02-14   [Report errors or provide feedback]
Gene Symbol RBM17
Gene Name RNA binding motif protein 17
Synonyms SPF45
Species Homo sapiens
Ensembl Gene ENSG00000134453
Encoded Proteins
IDBP-50668 RNA binding motif protein 17
IDBP-364215 RNA binding motif protein 17
IDBP-364217 RNA binding motif protein 17
IDBP-364218 RNA binding motif protein 17
IDBP-364220 RNA binding motif protein 17
IDBP-364223 RNA binding motif protein 17
Entrez Gene
Summary This gene encodes an RNA binding protein. The encoded protein is part of the spliceosome complex and functions in the second catalytic step of mRNA splicing. Alternatively spliced transcript variants have been described. Related pseudogenes exist on chromosomes 9 and 15. [provided by RefSeq, Mar 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 10: 6130950-6159420
Strand Forward strand
Band p15.1
Transcripts
ENST00000379888  ENSP00000369218
ENST00000437845  ENSP00000395448
ENST00000432931  ENSP00000408214
ENST00000446108  ENSP00000388638
ENST00000418631  ENSP00000402303
ENST00000447032  ENSP00000406024
ENST00000467214 
ENST00000481147 
ENST00000476706 
ENST00000465906 
ENST00000467080 
ENST00000496762 
Interactions
Number of Interactions   This gene and/or its encoded proteins are associated with 30 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 30 [view]
Protein‑Protein  29
[view]
Protein‑DNA 0
Protein‑RNA 1
[view]
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
 
Predicted by orthology
Total [view]
Gene Ontology
Accession GO Term
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID Gene Order Method Confidence Comments
ENSMUSG00000037197 Ortholuge Non-SSD Ortholog Possible paralog/unusual divergence/ gene prediction error
ENSBTAG00000021951 Not yet available Ortholuge Non-SSD Ortholog Possible paralog/unusual divergence/ gene prediction error
Pathways
NETPATH
REACTOME
KEGG
hsa03040  Spliceosome
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q96I25 
TrEMBL Q5W008 Q5W009 Q5W010 Q5W011 Q5W012
UniProt Splice Variant
Entrez Gene 84991 
UniGene Hs.603302 Hs.620308
RefSeq NM_001145547  NM_032905 
HUGO 16944 
OMIM 606935
CCDS CCDS7077 
HPRD 09501
IMGT
EMBL AF542550 AK314952 AL157395 BC007871 BC009064 BC039322 CH471072
GenPept AAH07871  AAH09064  AAH39322  AAQ09533  BAG37457  CAH73599  CAH73600  CAH73601  CAH73602  CAH73603  EAW86405  EAW86410 
ImmGen RBM17 (murine) 
RNA Seq Atlas 84991