Homo sapiens Gene: RBM17
Summary
InnateDB Gene IDBG-50666.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RBM17
Gene Name RNA binding motif protein 17
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000134453
Encoded Proteins
RNA binding motif protein 17
RNA binding motif protein 17
RNA binding motif protein 17
RNA binding motif protein 17
RNA binding motif protein 17
RNA binding motif protein 17
Protein Structure
Entrez Gene
Summary This gene encodes an RNA binding protein. The encoded protein is part of the spliceosome complex and functions in the second catalytic step of mRNA splicing. Alternatively spliced transcript variants have been described. Related pseudogenes exist on chromosomes 9 and 15. [provided by RefSeq, Mar 2009]
Gene Information
Type Protein coding
Genomic Location Chromosome 10:6088987-6117457
Strand Forward strand
Band p15.1
Transcripts
ENST00000379888 ENSP00000369218
ENST00000437845 ENSP00000395448
ENST00000432931 ENSP00000408214
ENST00000446108 ENSP00000388638
ENST00000418631 ENSP00000402303
ENST00000447032 ENSP00000406024
ENST00000467214
ENST00000481147
ENST00000476706
ENST00000465906
ENST00000467080
ENST00000496762
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 34 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 34 [view]
Protein-Protein 34 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000380 alternative mRNA splicing, via spliceosome
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005737 cytoplasm
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
Method
Confidence
Comments
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Not yet available
Non-SSD Ortholog
Possible paralog/unusual divergence/ gene prediction error
Pathways
NETPATH
REACTOME
KEGG
Spliceosome pathway
INOH
PID BIOCARTA
PID NCI
Cross-References
SwissProt Q96I25
TrEMBL Q5W009 Q5W010 Q5W011 Q5W012
UniProt Splice Variant
Entrez Gene 84991
UniGene Hs.603302 Hs.620308
RefSeq NM_001145547 NM_032905
HUGO HGNC:16944
OMIM 606935
CCDS CCDS7077
HPRD 09501
IMGT
EMBL AF542550 AK314952 AL157395 BC007871 BC009064 BC039322 CH471072
GenPept AAH07871 AAH09064 AAH39322 AAQ09533 BAG37457 EAW86405 EAW86410
ImmGen RBM17 (murine)
RNA Seq Atlas 84991