Version 5.4
Homo sapiens Gene: SNAPC3
Summary
InnateDB Gene IDBG-51128.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNAPC3
Gene Name small nuclear RNA activating complex, polypeptide 3, 50kDa
Synonyms PTFbeta; SNAP50
Species Homo sapiens
Ensembl Gene ENSG00000164975
Encoded Proteins
IDBP-51130
small nuclear RNA activating complex, polypeptide 3, 50kDa
IDBP-51138
small nuclear RNA activating complex, polypeptide 3, 50kDa
IDBP-363941
small nuclear RNA activating complex, polypeptide 3, 50kDa
IDBP-588767
small nuclear RNA activating complex, polypeptide 3, 50kDa
IDBP-595889
small nuclear RNA activating complex, polypeptide 3, 50kDa
IDBP-810323
small nuclear RNA activating complex, polypeptide 3, 50kDa
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 9:15422704-15465953
Strand Forward strand
Band p22.3
Transcripts
ENST00000380821 ENSP00000370200
ENST00000380799 ENSP00000370177
ENST00000421710 ENSP00000391832
ENST00000467062 ENSP00000436699
ENST00000490969 ENSP00000432393
ENST00000461041
ENST00000610884 ENSP00000483273
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
Experimentally validated
Total 7 [view]
Protein-Protein 5 [view]
Protein-DNA 2 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006383 transcription from RNA polymerase III promoter
GO:0009301 snRNA transcription
GO:0010467 gene expression
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000028483
View Gene Order
ENSBTAG00000004592
Not yet available
Pathways
NETPATH
REACTOME
REACT_22339
RNA Polymerase III Abortive And Retractive Initiation pathway
REACT_571
RNA Polymerase III Transcription Initiation From Type 3 Promoter pathway
REACT_281
RNA Polymerase III Transcription Initiation pathway
REACT_1371
RNA Polymerase III Transcription pathway
REACT_21352
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription pathway
REACT_71
Gene Expression pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL Q5T282
UniProt Splice Variant
Entrez Gene 6619
UniGene Hs.546299 Hs.598022 Hs.739061 Hs.741979 Hs.743480
RefSeq NM_001039697
HUGO HGNC:11136
OMIM 602348
CCDS CCDS6478
HPRD 03826
IMGT
EMBL AL441925
GenPept
RNA Seq Atlas 6619

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca