Version 5.4
Homo sapiens Gene: RNF13
Summary
InnateDB Gene IDBG-60897.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol RNF13
Gene Name ring finger protein 13
Synonyms RZF
Species Homo sapiens
Ensembl Gene ENSG00000082996
Encoded Proteins
IDBP-60899
ring finger protein 13
IDBP-60901
ring finger protein 13
IDBP-244731
ring finger protein 13
IDBP-482610
ring finger protein 13
IDBP-480605
ring finger protein 13
IDBP-476907
ring finger protein 13
IDBP-480454
ring finger protein 13
IDBP-481037
ring finger protein 13
IDBP-475025
ring finger protein 13
IDBP-476753
ring finger protein 13
IDBP-481604
ring finger protein 13
IDBP-480553
ring finger protein 13
IDBP-479515
ring finger protein 13
IDBP-481612
ring finger protein 13
IDBP-473753
ring finger protein 13
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary The protein encoded by this gene contains a RING zinc finger, a motif known to be involved in protein-protein interactions. The specific function of this gene has not yet been determined. Alternatively spliced transcript variants that encode the same protein have been reported. A pseudogene, which is also located on chromosome 3, has been defined for this gene. [provided by RefSeq, Jul 2008]
Gene Information
Type Protein coding
Genomic Location Chromosome 3:149812708-149962139
Strand Forward strand
Band q25.1
Transcripts
ENST00000344229 ENSP00000341361
ENST00000361785 ENSP00000355268
ENST00000392894 ENSP00000376628
ENST00000470151 ENSP00000419836
ENST00000466478 ENSP00000419508
ENST00000491086 ENSP00000420667
ENST00000467977 ENSP00000418308
ENST00000474348 ENSP00000420124
ENST00000467996 ENSP00000419809
ENST00000468648 ENSP00000420067
ENST00000459632 ENSP00000419069
ENST00000466795 ENSP00000417655
ENST00000490631 ENSP00000417294
ENST00000482083 ENSP00000418863
ENST00000468289 ENSP00000420510
ENST00000493238
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 16 experimentally validated interaction(s) in this database.
Experimentally validated
Total 16 [view]
Protein-Protein 16 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0051865 protein autoubiquitination
Cellular Component
GO:0000139 Golgi membrane
GO:0005637 nuclear inner membrane
GO:0005765 lysosomal membrane
GO:0005789 endoplasmic reticulum membrane
GO:0016021 integral component of membrane
GO:0031902 late endosome membrane
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000036503
View Gene Order
ENSBTAG00000011147
Not yet available
Cross-References
SwissProt
TrEMBL C9J7B4
UniProt Splice Variant
Entrez Gene 11342
UniGene Hs.12333
RefSeq NM_007282 NM_183381 XM_005247092
HUGO HGNC:10057
OMIM 609247
CCDS CCDS3146
HPRD 11503
IMGT
EMBL AC069216 AC117395
GenPept
RNA Seq Atlas 11342

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca