Version 5.4
Homo sapiens Gene: SNRNP70
Summary
InnateDB Gene IDBG-62088.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SNRNP70
Gene Name small nuclear ribonucleoprotein 70kDa (U1)
Synonyms RNPU1Z; RPU1; Snp1; SNRP70; U1-70K; U170K; U1AP; U1RNP
Species Homo sapiens
Ensembl Gene ENSG00000104852
Encoded Proteins
IDBP-62090
small nuclear ribonucleoprotein 70kDa (U1)
IDBP-293972
small nuclear ribonucleoprotein 70kDa (U1)
IDBP-761831
IDBP-761081
IDBP-763607
IDBP-765732
IDBP-764842
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 19:49085419-49108605
Strand Forward strand
Band q13.33
Transcripts
ENST00000221448 ENSP00000221448
ENST00000401730 ENSP00000385077
ENST00000544278
ENST00000598441 ENSP00000472998
ENST00000595231 ENSP00000471006
ENST00000598984 ENSP00000470023
ENST00000599687
ENST00000601065 ENSP00000468952
ENST00000597936
ENST00000601411 ENSP00000468828
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 133 experimentally validated interaction(s) in this database.
They are also associated with 2 interaction(s) predicted by orthology.
Experimentally validated
Total 133 [view]
Protein-Protein 133 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 2 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0010467 gene expression
GO:0043484 regulation of RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005685 U1 snRNP
GO:0016607 nuclear speck
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000063511
View Gene Order
ENSBTAG00000001996
Not yet available
Pathways
NETPATH
NetPath_11
TCR pathway
REACTOME
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL M0QX04
UniProt Splice Variant
Entrez Gene 6625
UniGene Hs.467097
RefSeq NM_001301069 NM_003089 XM_005259177 XM_005259178
HUGO HGNC:11150
OMIM 180740
CCDS CCDS12756 CCDS74417
HPRD 01617
IMGT
EMBL AC008687
GenPept
RNA Seq Atlas 6625

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca