Version 5.4
| Bos taurus Gene: LSM2 | |||||||||
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| Summary | |||||||||
| InnateDB Gene | IDBG-633840.3 | ||||||||
| Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||
| Gene Symbol | LSM2 | ||||||||
| Gene Name | U6 snRNA-associated Sm-like protein LSm2 | ||||||||
| Synonyms | |||||||||
| Species | Bos taurus | ||||||||
| Ensembl Gene | ENSBTAG00000005634 | ||||||||
| Encoded Proteins |
U6 snRNA-associated Sm-like protein LSm2
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| Protein Structure | |||||||||
| Useful resources | Stemformatics EHFPI ImmGen | ||||||||
| Entrez Gene | |||||||||
| Summary |
This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000204392:
This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Pseudogenes of this gene are located on the short arm of chromosomes 6 and 19. [provided by RefSeq, Nov 2011] |
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| Gene Information | |||||||||
| Type | Protein coding | ||||||||
| Genomic Location | Chromosome 23:27339521-27344476 | ||||||||
| Strand | Forward strand | ||||||||
| Band | |||||||||
| Transcripts |
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| Interactions | |||||||||
| Number of Interactions |
This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 41 interaction(s) predicted by orthology.
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| Gene Ontology | |||||||||
Molecular Function |
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| Biological Process |
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| Cellular Component |
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| Orthologs | |||||||||
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Species
Homo sapiens
Mus musculus
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Gene ID
Gene Order
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| Pathway Predictions based on Human Orthology Data | |||||||||
| NETPATH | |||||||||
| REACTOME |
mRNA decay by 5' to 3' exoribonuclease pathway
mRNA Splicing - Major Pathway pathway
mRNA Splicing - Minor Pathway pathway
Processing of Capped Intron-Containing Pre-mRNA pathway
Deadenylation-dependent mRNA decay pathway
mRNA Splicing pathway
Gene Expression pathway
mRNA Splicing pathway
mRNA Splicing - Minor Pathway pathway
mRNA decay by 5' to 3' exoribonuclease pathway
Gene Expression pathway
mRNA Splicing - Major Pathway pathway
Processing of Capped Intron-Containing Pre-mRNA pathway
Deadenylation-dependent mRNA decay pathway
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| KEGG |
RNA degradation pathway
Spliceosome pathway
RNA degradation pathway
Spliceosome pathway
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| INOH | |||||||||
| PID NCI | |||||||||
| Cross-References | |||||||||
| SwissProt | |||||||||
| TrEMBL | A6QQV3 | ||||||||
| UniProt Splice Variant | |||||||||
| Entrez Gene | 538662 | ||||||||
| UniGene | Bt.43826 | ||||||||
| RefSeq | NM_001101177 | ||||||||
| HUGO | |||||||||
| OMIM | |||||||||
| CCDS | |||||||||
| HPRD | |||||||||
| IMGT | |||||||||
| EMBL | BC150005 DAAA02055373 | ||||||||
| GenPept | AAI50006 | ||||||||
| RNA Seq Atlas | 538662 | ||||||||