Version 5.4
Bos taurus Gene: SYNDIG1
Summary
InnateDB Gene IDBG-639168.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SYNDIG1
Gene Name Synapse differentiation-inducing gene protein 1
Synonyms DSPC2; TMEM90B
Species Bos taurus
Ensembl Gene ENSBTAG00000040147
Encoded Proteins
IDBP-691298
Synapse differentiation-inducing gene protein 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000101463:
Gene Information
Type Protein coding
Genomic Location Chromosome 13:42791822-42894170
Strand Forward strand
Band
Transcripts
ENSBTAT00000054611 ENSBTAP00000051406
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0035254 glutamate receptor binding
GO:0042803 protein homodimerization activity
Biological Process
GO:0006886 intracellular protein transport
GO:0009607 response to biotic stimulus
GO:0051965 positive regulation of synapse assembly
GO:0097091 synaptic vesicle clustering
Cellular Component
GO:0005768 endosome
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030054 cell junction
GO:0030425 dendrite
GO:0031901 early endosome membrane
GO:0042995 cell projection
GO:0043197 dendritic spine
GO:0043198 dendritic shaft
GO:0044297 cell body
GO:0045202 synapse
GO:0045211 postsynaptic membrane
GO:0060076 excitatory synapse
Orthologs
Species
Homo sapiens
Mus musculus
Gene ID
Gene Order
ENSG00000101463
View Gene Order
ENSMUSG00000074736
View Gene Order
Cross-References
SwissProt Q08DM6
TrEMBL
UniProt Splice Variant
Entrez Gene 541217
UniGene Bt.44893 Bt.98042
RefSeq NM_001076263
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL BC123666
GenPept AAI23667
RNA Seq Atlas 541217
Transcript Frequencies
Tag Count based mRNA-Abundances across 87 different Tissues (TPM).

Based on Data from Bovine Gene Atlas

Tag Count based mRNA-Abundances across 87 different Tissues (TPM)

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If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca