Version 5.4
Homo sapiens Gene: SF3B5
Summary
InnateDB Gene IDBG-97417.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SF3B5
Gene Name splicing factor 3b, subunit 5, 10kDa
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000169976
Encoded Proteins
IDBP-97419
splicing factor 3b, subunit 5, 10kDa
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 6:144094881-144095573
Strand Reverse strand
Band q24.2
Transcripts
ENST00000367569 ENSP00000356541
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 26 experimentally validated interaction(s) in this database.
Experimentally validated
Total 26 [view]
Protein-Protein 25 [view]
Protein-DNA 1 [view]
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0008380 RNA splicing
GO:0010467 gene expression
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005689 U12-type spliceosomal complex
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000078348
View Gene Order
ENSBTAG00000009795
Not yet available
Pathways
NETPATH
REACTOME
REACT_467
mRNA Splicing - Major Pathway pathway
REACT_1753
mRNA Splicing - Minor Pathway pathway
REACT_125
Processing of Capped Intron-Containing Pre-mRNA pathway
REACT_1735
mRNA Splicing pathway
REACT_71
Gene Expression pathway
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt Q9BWJ5
TrEMBL
UniProt Splice Variant
Entrez Gene 83443
UniGene
RefSeq NM_031287
HUGO HGNC:21083
OMIM
CCDS CCDS5204
HPRD
IMGT
EMBL AK312079 AL031390 BC000198 BK000562 CH471051
GenPept AAH00198 BAG35015 CAI19755 DAA00073 EAW47851
RNA Seq Atlas 83443

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca