InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Protein: ATP5D

Summary

InnateDB Protein

IDBP-14056.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

ATP5D

Protein Name

ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

Synonyms

Species

Homo sapiens

Ensembl Protein

ENSP00000215375

InnateDB Gene

IDBG-14054 (ATP5D)

Protein Structure

UniProt Annotation

Function

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP turnover in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and of the central stalk which is part of the complex rotary element. Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Subcellular Localization

Mitochondrion. Mitochondrion inner membrane.

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 9 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.

Experimentally validated
Total	9 [view]
Protein-Protein	8 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	1 [view]
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	3 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005215	transporter activity
GO:0005524	ATP binding
GO:0016887	ATPase activity
GO:0022857	transmembrane transporter activity
GO:0043531	ADP binding
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
GO:0046961	proton-transporting ATPase activity, rotational mechanism

Biological Process

GO:0006119	oxidative phosphorylation
GO:0006200	ATP catabolic process
GO:0006754	ATP biosynthetic process
GO:0015986	ATP synthesis coupled proton transport
GO:0022904	respiratory electron transport chain
GO:0042776	mitochondrial ATP synthesis coupled proton transport
GO:0044237	cellular metabolic process
GO:0044281	small molecule metabolic process
GO:0046688	response to copper ion

Cellular Component

GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
GO:0005739	mitochondrion
GO:0005743	mitochondrial inner membrane
GO:0005753	mitochondrial proton-transporting ATP synthase complex
GO:0005759	mitochondrial matrix
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)

Protein Structure and Domains

PDB ID

InterPro

IPR001469 ATPase, F1 complex, delta/epsilon subunit
IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal
IPR020547 ATPase, F1 complex, delta/epsilon subunit, C-terminal domain

PFAM

PF02823
PF00401

PRINTS

PIRSF

SMART

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

P30049

PhosphoSite