Version 5.4
Mus musculus Protein: Htatsf1
Summary
InnateDB Protein IDBP-147255.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Htatsf1
Protein Name HIV TAT specific factor 1
Synonyms 1600023H17Rik; 2600017A12Rik; 2700077B20Rik; TAT-SF1;
Species Mus musculus
Ensembl Protein ENSMUSP00000086027
InnateDB Gene IDBG-147253 (Htatsf1)
Protein Structure
UniProt Annotation
Function Functions as a general transcription factor playing a role in the process of transcriptional elongation. May mediate the reciprocal stimulatory effect of splicing on transcriptional elongation (By similarity). {ECO:0000250}.
Subcellular Localization Nucleus {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 7 experimentally validated interaction(s) in this database.
They are also associated with 27 interaction(s) predicted by orthology.
Experimentally validated
Total 7 [view]
Protein-Protein 7 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 27 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0008150 biological_process
Cellular Component
GO:0005634 nucleus
Protein Structure and Domains
PDB ID MGI:1919709
InterPro IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
PFAM PF00076
PRINTS
PIRSF
SMART SM00360
SM00361
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q8BGC0
PhosphoSite PhosphoSite-Q8BGC0
TrEMBL
UniProt Splice Variant
Entrez Gene 72459
UniGene Mm.2152
RefSeq NP_083647
MGI ID
MGI Symbol Htatsf1
OMIM
CCDS CCDS40983
HPRD
IMGT
EMBL AK005527 AK011234 AK049495 AL672263 BC037711 BC114588 BC114589
GenPept AAH37711 AAI14589 AAI14590 BAB24100 BAB27483 BAC33777 CAM25501

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca