Version 5.4
Mus musculus Protein: Synm
Summary
InnateDB Protein IDBP-192313.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Synm
Protein Name synemin, intermediate filament protein
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000050987
InnateDB Gene IDBG-192311 (Synm)
Protein Structure
UniProt Annotation
Function Type-VI intermediate filament (IF) which plays an important cytoskeletal role within the muscle cell cytoskeleton. It forms heteropolymeric IFs with desmin and/or vimentin, and via its interaction with cytoskeletal proteins alpha-dystrobrevin, dystrophin, talin-1, utrophin and vinculin, is able to link these heteropolymeric IFs to adherens-type junctions, such as to the costameres, neuromuscular junctions, and myotendinous junctions within striated muscle cells (By similarity). {ECO:0000250}.
Subcellular Localization Cytoplasm, cytoskeleton {ECO:0000269PubMed:17356066}. Cell junction, adherens junction {ECO:0000250UniProtKB:O15061}. Note=There are at least two distinct SYNM subpopulations, one in which SYMN interacts with DES within the Z-lines, and another in which it interacts with both DTNA and DES at the costamere. {ECO:0000250UniProtKB:O15061, ECO:0000269PubMed:17356066}.
Disease Associations
Tissue Specificity Isoform 2 and isoform 3 are detected in adult skeletal muscle, heart and bladder, whereas isoform 1 is only detected in adult bladder (at protein level). {ECO:0000269PubMed:15265691}.
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 12 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 12 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005198 structural molecule activity
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0008307 structural constituent of muscle
GO:0017166 vinculin binding
GO:0019215 intermediate filament binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005882 intermediate filament
GO:0005912 adherens junction
GO:0016020 membrane
GO:0043034 costamere
GO:0060053 neurofilament cytoskeleton
Protein Structure and Domains
PDB ID MGI:2661187
InterPro IPR001664 Intermediate filament protein
PFAM PF00038
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q70IV5
PhosphoSite PhosphoSite-Q70IV5
TrEMBL Q80XS8
UniProt Splice Variant
Entrez Gene 233335
UniGene Mm.60526
RefSeq NP_997546
MGI ID
MGI Symbol Synm
OMIM
CCDS CCDS39983
HPRD
IMGT
EMBL AC158296 AJ579700 AJ579701 AJ579702 AK143019 AK172937 BC042785
GenPept AAH42785 BAD32215 BAE25250 CAE30277 CAE30278 CAE30279

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca