Mus musculus Protein: Lin28a | |||||||||||||||||||||||||
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Summary | |||||||||||||||||||||||||
InnateDB Protein | IDBP-195577.6 | ||||||||||||||||||||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||||||||||
Gene Symbol | Lin28a | ||||||||||||||||||||||||
Protein Name | lin-28 homolog A (C. elegans) | ||||||||||||||||||||||||
Synonyms | AL024421; ENSMUSG00000070700; Gm10299; Lin-28; lin-28A; Lin28; Tex17; | ||||||||||||||||||||||||
Species | Mus musculus | ||||||||||||||||||||||||
Ensembl Protein | ENSMUSP00000050488 | ||||||||||||||||||||||||
InnateDB Gene | IDBG-195575 (Lin28a) | ||||||||||||||||||||||||
Protein Structure | |||||||||||||||||||||||||
UniProt Annotation | |||||||||||||||||||||||||
Function | Acts as a 'translational enhancer', driving specific mRNAs to polysomes and thus increasing the efficiency of protein synthesis. Its association with the translational machinery and target mRNAs results in an increased number of initiation events per molecule of mRNA and, indirectly, in stabilizing the mRNAs. Binds IGF2 mRNA, MYOD1 mRNA, ARBP/36B4 ribosomal protein mRNA and its own mRNA. Essential for skeletal muscle differentiation program through the translational up-regulation of IGF2 expression. Acts as a suppressor of microRNA (miRNA) biogenesis by specifically binding the precursor let-7 (pre-let-7), a miRNA precursor. Acts by binding pre-let-7 and recruiting ZCCHC11/TUT4 uridylyltransferase, leading to the terminal uridylation of pre- let-7. Uridylated pre-let-7 miRNAs fail to be processed by Dicer and undergo degradation. Degradation of pre-let-7 in embryonic stem (ES) cells contributes to the maintenance of ES cells. In contrast, Lin28a down-regulation in neural stem cells by miR-125, allows the processing of pre-let-7. Specifically recognizes the 5'-GGAG-3' motif in the terminal loop of pre-let-7. Also recognizes and binds non pre-let-7 pre-miRNAs that contain the 5'- GGAG-3' motif in the terminal loop, leading to their terminal uridylation and subsequent degradation. {ECO:0000269PubMed:17473174, ECO:0000269PubMed:18292307, ECO:0000269PubMed:18566191, ECO:0000269PubMed:18604195}. | ||||||||||||||||||||||||
Subcellular Localization | Cytoplasm. Nucleus, nucleolus. Note=Shuttles between the cytoplasm and the nucleus. Localizes to cytoplasmic processing bodies and stress granules (By similarity). Nucleolar localization observed in 10-15% of the nuclei in differentiated myotubes. {ECO:0000250}. | ||||||||||||||||||||||||
Disease Associations | |||||||||||||||||||||||||
Tissue Specificity | Expressed in embryonic stem cells (ES cells), spermatagonia and testis. Expressed in numerous epithelial tissues including the epithelia of the small intestine, the intralobular duct epithelium of the mammary gland and the epithelia of Henle's loop in the kidney and in the collecting duct (at protein level). Also expressed in the myocardium and skeletal muscle (at protein level). {ECO:0000269PubMed:11279525, ECO:0000269PubMed:12798299, ECO:0000269PubMed:14643679, ECO:0000269PubMed:15722555}. | ||||||||||||||||||||||||
Comments | |||||||||||||||||||||||||
Interactions | |||||||||||||||||||||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 18 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
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Gene Ontology | |||||||||||||||||||||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Protein Structure and Domains | |||||||||||||||||||||||||
PDB ID | MGI:1890546 | ||||||||||||||||||||||||
InterPro |
IPR001878
Zinc finger, CCHC-type IPR002059 Cold-shock protein, DNA-binding IPR011129 Cold shock protein IPR012340 Nucleic acid-binding, OB-fold |
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PFAM |
PF00098
PF00313 |
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PRINTS |
PR00050
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PIRSF | |||||||||||||||||||||||||
SMART |
SM00343
SM00357 |
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TIGRFAMs | |||||||||||||||||||||||||
Post-translational Modifications | |||||||||||||||||||||||||
Modification | |||||||||||||||||||||||||
Cross-References | |||||||||||||||||||||||||
SwissProt | Q8K3Y3 | ||||||||||||||||||||||||
PhosphoSite | PhosphoSite-Q8K3Y3 | ||||||||||||||||||||||||
TrEMBL | H3BLC6 | ||||||||||||||||||||||||
UniProt Splice Variant | |||||||||||||||||||||||||
Entrez Gene | 83557 | ||||||||||||||||||||||||
UniGene | Mm.421761 | ||||||||||||||||||||||||
RefSeq | NP_665832 | ||||||||||||||||||||||||
MGI ID | 3TS2 | ||||||||||||||||||||||||
MGI Symbol | Lin28a | ||||||||||||||||||||||||
OMIM | |||||||||||||||||||||||||
CCDS | CCDS18761 | ||||||||||||||||||||||||
HPRD | |||||||||||||||||||||||||
IMGT | |||||||||||||||||||||||||
EMBL | AF521097 AL670680 BC068304 | ||||||||||||||||||||||||
GenPept | AAH68304 AAM77749 | ||||||||||||||||||||||||