Version 5.4
Mus musculus Protein: Kdm1a
Summary
InnateDB Protein IDBP-198086.5
Last Modified 2012-02-14 [Report errors or provide feedback]
Gene Symbol Kdm1a
Protein Name lysine (K)-specific demethylase 1A
Synonyms 1810043O07Rik; AA408884; Aof2; D4Ertd478e; Kdm1; Lsd1; mKIAA0601;
Species Mus musculus
Ensembl Protein ENSMUSP00000035457
InnateDB Gene IDBG-198084 (Kdm1a)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 46 experimentally validated interaction(s) in this database.
They are also associated with 98 interaction(s) predicted by orthology.
Experimentally validated
Total 46 [view]
Protein-Protein 46 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 98 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0016491 oxidoreductase activity
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0034720 histone H3-K4 demethylation
GO:0055114 oxidation-reduction process
Cellular Component
GO:0005634 nucleus
Protein Structure and Domains
PDB ID MGI:1196256
InterPro IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain
IPR002937 Amine oxidase
IPR003953 FAD binding domain
IPR006076 FAD dependent oxidoreductase
IPR007526 SWIRM domain
IPR009057 Homeodomain-like
IPR017366 Histone lysine-specific demethylase
IPR023753 Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain
PFAM PF00070
PF01593
PF00890
PF01266
PF04433
PF07992
PRINTS
PIRSF PIRSF038051
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-
TrEMBL
UniProt Splice Variant
Entrez Gene 99982
UniGene Mm.411503
RefSeq
MGI ID
MGI Symbol Kdm1a
OMIM
CCDS
HPRD
IMGT
EMBL
GenPept

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca