Version 5.4
Mus musculus Protein: Ccdc55
Summary
InnateDB Protein IDBP-201335.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Ccdc55
Protein Name coiled-coil domain containing 55
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000099552
InnateDB Gene IDBG-201333 (Ccdc55)
Protein Structure
UniProt Annotation
Function RNA-binding protein that mediates pre-mRNA alternative splicing regulation. {ECO:0000250}.
Subcellular Localization Nucleus {ECO:0000250}. Nucleus speckle {ECO:0000250}. Note=Colocalizes with splicing factors SRSF1 and SRSF2 in speckles. {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.
Predicted by orthology
Total 9 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0006913 nucleocytoplasmic transport
GO:0008380 RNA splicing
GO:0032502 developmental process
Cellular Component
GO:0005634 nucleus
GO:0016607 nuclear speck
GO:0030529 ribonucleoprotein complex
Protein Structure and Domains
PDB ID MGI:2144305
InterPro IPR018612 Domain of unknown function DUF2040
PFAM PF09745
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q5NCR9
PhosphoSite PhosphoSite-Q5NCR9
TrEMBL Q8BQY7
UniProt Splice Variant
Entrez Gene 237859
UniGene Mm.156195
RefSeq NP_001012309
MGI ID
MGI Symbol Ccdc55
OMIM
CCDS CCDS25075
HPRD
IMGT
EMBL AK041865 AK046155 AK162143 AK168573 AL603842 BC089560
GenPept AAH89560 BAC32615 BAE20609 BAE36751 BAE40443 CAI35064

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca