InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Protein: Trim50

Summary

InnateDB Protein

IDBP-203758.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Trim50

Protein Name

tripartite motif-containing 50

Synonyms

Species

Mus musculus

Ensembl Protein

ENSMUSP00000066662

InnateDB Gene

IDBG-203756 (Trim50)

Protein Structure

UniProt Annotation

Function

E3 ubiquitin-protein ligase. {ECO:0000250}.

Subcellular Localization

Cytoplasm {ECO:0000250}.

Disease Associations

Tissue Specificity

Expressed in the stomach. {ECO:0000269PubMed:18398435}.

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 9 interaction(s) predicted by orthology.

Experimentally validated
Total	1 [view]
Protein-Protein	1 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Predicted by orthology
Total	9 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0016874	ligase activity
GO:0046872	metal ion binding

Biological Process

GO:0008152	metabolic process
GO:0070201	regulation of establishment of protein localization

Cellular Component

GO:0005622	intracellular
GO:0005737	cytoplasm
GO:0016235	aggresome

Protein Structure and Domains

PDB ID

MGI:2664992

InterPro

IPR000315 Zinc finger, B-box
IPR001841 Zinc finger, RING-type
IPR001870 B30.2/SPRY domain
IPR003877 SPla/RYanodine receptor SPRY
IPR003879 Butyrophylin-like
IPR006574 SPRY-associated
IPR008985 Concanavalin A-like lectin/glucanases superfamily
IPR018355 SPla/RYanodine receptor subgroup
IPR018957 Zinc finger, C3HC4 RING-type

PFAM

PF00643
PF13639
PF14634
PF00622
PF13765
PF00097

PRINTS

PR01407

PIRSF

SMART

SM00336
SM00184
SM00449
SM00589

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt