Version 5.4
Mus musculus Protein: Rbm39
Summary
InnateDB Protein IDBP-262055.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbm39
Protein Name RNA binding motif protein 39
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000105216
InnateDB Gene IDBG-210839 (Rbm39)
Protein Structure
UniProt Annotation
Function Transcriptional coactivator for steroid nuclear receptors ESR1/ER-alpha and ESR2/ER-beta, and JUN/AP-1. May be involved in pre-mRNA splicing process. {ECO:0000269PubMed:11704680}.
Subcellular Localization Nucleus {ECO:0000305}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 18 experimentally validated interaction(s) in this database.
They are also associated with 94 interaction(s) predicted by orthology.
Experimentally validated
Total 18 [view]
Protein-Protein 18 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 94 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003713 transcription coactivator activity
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0015630 microtubule cytoskeleton
Protein Structure and Domains
PDB ID MGI:2157953
InterPro IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
IPR006509 Splicing factor, RBM39-like
PFAM PF00076
PRINTS
PIRSF
SMART SM00360
SM00361
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q8VH51
PhosphoSite PhosphoSite-Q8VH51
TrEMBL Q3TJP1
UniProt Splice Variant
Entrez Gene 170791
UniGene Mm.486173
RefSeq NP_573505
MGI ID 4J5O
MGI Symbol Rbm39
OMIM
CCDS CCDS16964
HPRD
IMGT
EMBL AK147076 AK167355 AL929404 AY061882 BC004000 BC030493 BC086645 BX649640 CH466551
GenPept AAH04000 AAH30493 AAH86645 AAL32373 BAE27657 BAE39454 CAM13496 CAM26749 EDL06184

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca