Version 5.4
Mus musculus Gene: Rbm39
Summary
InnateDB Gene IDBG-210839.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Rbm39
Gene Name RNA binding motif protein 39
Synonyms
Species Mus musculus
Ensembl Gene ENSMUSG00000027620
Encoded Proteins
IDBP-210841
RNA binding motif protein 39
IDBP-262055
RNA binding motif protein 39
IDBP-262057
RNA binding motif protein 39
IDBP-542735
RNA binding motif protein 39
IDBP-541024
RNA binding motif protein 39
IDBP-541569
RNA binding motif protein 39
IDBP-542733
RNA binding motif protein 39
IDBP-532046
RNA binding motif protein 39
IDBP-535765
RNA binding motif protein 39
IDBP-541850
RNA binding motif protein 39
IDBP-532832
RNA binding motif protein 39
IDBP-532718
RNA binding motif protein 39
IDBP-536178
RNA binding motif protein 39
IDBP-534880
RNA binding motif protein 39
IDBP-537672
RNA binding motif protein 39
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000131051:
This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]
Gene Information
Type Protein coding
Genomic Location Chromosome 2:156147239-156180238
Strand Reverse strand
Band H1
Transcripts
ENSMUST00000029149 ENSMUSP00000029149
ENSMUST00000109587 ENSMUSP00000105216
ENSMUST00000109584 ENSMUSP00000105213
ENSMUST00000146297 ENSMUSP00000119298
ENSMUST00000142071 ENSMUSP00000116820
ENSMUST00000155837 ENSMUSP00000119541
ENSMUST00000153514 ENSMUSP00000119204
ENSMUST00000148794 ENSMUSP00000117462
ENSMUST00000126992 ENSMUSP00000116950
ENSMUST00000135274
ENSMUST00000131625
ENSMUST00000130516
ENSMUST00000146288 ENSMUSP00000114824
ENSMUST00000150272
ENSMUST00000138381
ENSMUST00000140001
ENSMUST00000146549 ENSMUSP00000115488
ENSMUST00000147098 ENSMUSP00000120597
ENSMUST00000137297
ENSMUST00000154677 ENSMUSP00000121603
ENSMUST00000137566 ENSMUSP00000119054
ENSMUST00000132929
ENSMUST00000152919 ENSMUSP00000124018
ENSMUST00000128243
ENSMUST00000137340
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 18 experimentally validated interaction(s) in this database.
They are also associated with 94 interaction(s) predicted by orthology.
Experimentally validated
Total 18 [view]
Protein-Protein 18 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 94 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003713 transcription coactivator activity
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0044822 poly(A) RNA binding
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:2001141 regulation of RNA biosynthetic process
Cellular Component
GO:0005634 nucleus
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0015630 microtubule cytoskeleton
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000131051
View Gene Order
ENSBTAG00000003949
Not yet available
Cross-References
SwissProt
TrEMBL D6RCZ8
UniProt Splice Variant
Entrez Gene 170791
UniGene Mm.486173
RefSeq NM_001291114 NM_001291115 NM_133242 XM_006498832 XM_006498834 XM_006498850
OMIM
CCDS CCDS16964 CCDS71168
HPRD
IMGT
MGI ID MGI:2157953
MGI Symbol Rbm39
EMBL AL929404 BX649640
GenPept
RNA Seq Atlas 170791

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca