Version 5.4
Mus musculus Protein: Prdm16
Summary
InnateDB Protein IDBP-270454.5
Last Modified 2012-02-14 [Report errors or provide feedback]
Gene Symbol Prdm16
Protein Name PR domain containing 16
Synonyms 5730557K01Rik; csp1; mel1;
Species Mus musculus
Ensembl Protein ENSMUSP00000101261
InnateDB Gene IDBG-207046 (Prdm16)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 11 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.
Experimentally validated
Total 11 [view]
Protein-Protein 11 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 5 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0046332 SMAD binding
GO:0046872 metal ion binding
Biological Process
GO:0022008 neurogenesis
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0035019 somatic stem cell maintenance
GO:0043586 tongue development
GO:0060021 palate development
Cellular Component
Protein Structure and Domains
PDB ID MGI:1917923
InterPro IPR001214 SET domain
IPR003656 Zinc finger, BED-type predicted
IPR007087 Zinc finger, C2H2
IPR015880 Zinc finger, C2H2-like
PFAM PF00856
PF02892
PF00096
PRINTS
PIRSF
SMART SM00317
SM00614
SM00355
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-
TrEMBL A2A934
UniProt Splice Variant
Entrez Gene 70673
UniGene Mm.257785
RefSeq NP_001171466
MGI ID
MGI Symbol Prdm16
OMIM
CCDS CCDS51400
HPRD
IMGT
EMBL AL611950 AL627123 AL627127 AL627226
GenPept

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca