Version 5.4
Mus musculus Protein: Col13a1
Summary
InnateDB Protein IDBP-270848.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Col13a1
Protein Name collagen, type XIII, alpha 1
Synonyms
Species Mus musculus
Ensembl Protein ENSMUSP00000101094
InnateDB Gene IDBG-156451 (Col13a1)
Protein Structure
UniProt Annotation
Function Involved in cell-matrix and cell-cell adhesion interactions that are required for normal development. May participate in the linkage between muscle fiber and basement membrane. May play a role in endochondral ossification of bone and branching morphogenesis of lung. Binds heparin. {ECO:0000250UniProtKB:Q5TAT6, ECO:0000269PubMed:11566879, ECO:0000269PubMed:11583983, ECO:0000269PubMed:16007336}.
Subcellular Localization Cell membrane {ECO:0000269PubMed:9624150}; Single-pass type II membrane protein {ECO:0000269PubMed:9624150}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
GO:0008201 heparin binding
Biological Process
GO:0001763 morphogenesis of a branching structure
GO:0001958 endochondral ossification
GO:0007160 cell-matrix adhesion
GO:0016337 single organismal cell-cell adhesion
GO:0030154 cell differentiation
Cellular Component
GO:0005581 collagen trimer
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0016021 integral component of membrane
Protein Structure and Domains
PDB ID MGI:1277201
InterPro IPR008160 Collagen triple helix repeat
PFAM PF01391
PRINTS
PIRSF
SMART
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q9R1N9
PhosphoSite PhosphoSite-Q9R1N9
TrEMBL
UniProt Splice Variant
Entrez Gene 12817
UniGene Mm.300931
RefSeq NP_031757
MGI ID
MGI Symbol Col13a1
OMIM
CCDS CCDS35918
HPRD
IMGT
EMBL AF063666 AF063667 AF063668 AF063669 AF063670 AF063671 AF063672 AF063673 AF063674 AF063675 AF063676 AF063677 AF063678 AF063679 AF063680 AF063681 AF063682 AF063683 AF063684 AF063685 AF063686 AF063687 AF063688 AF063689 AF063690 AF063691 AF063692 AF063693 U30292
GenPept AAC24314 AAD50327

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

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Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca