InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Gene: Col13a1

Summary

InnateDB Gene

IDBG-156451.6

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

Col13a1

Gene Name

collagen, type XIII, alpha 1

Synonyms

Species

Mus musculus

Ensembl Gene

ENSMUSG00000058806

Encoded Proteins

IDBP-270848

collagen, type XIII, alpha 1

IDBP-270850

collagen, type XIII, alpha 1

IDBP-270852

collagen, type XIII, alpha 1

IDBP-531497

collagen, type XIII, alpha 1

Protein Structure

Useful resources

Stemformatics EHFPI ImmGen

Entrez Gene

Summary

This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000197467:
This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined. [provided by RefSeq, Jul 2008]

Gene Information

Type

Protein coding

Genomic Location

Chromosome 10:61838236-61979108

Strand

Reverse strand

Band

Transcripts

ENSMUST00000051826
ENSMUST00000105454	ENSMUSP00000101094
ENSMUST00000105453	ENSMUSP00000101093
ENSMUST00000105452	ENSMUSP00000101092
ENSMUST00000105451
ENSMUST00000145469	ENSMUSP00000117248
ENSMUST00000153120

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005515	protein binding
GO:0008201	heparin binding

Biological Process

GO:0001763	morphogenesis of a branching structure
GO:0001958	endochondral ossification
GO:0007160	cell-matrix adhesion
GO:0016337	single organismal cell-cell adhesion
GO:0030154	cell differentiation