InnateDB Protein
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IDBP-294394.6
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Last Modified
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2014-10-13 [Report errors or provide feedback]
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Gene Symbol
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LSM5
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Protein Name
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LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
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Synonyms
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YER146W;
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Species
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Homo sapiens
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Ensembl Protein
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ENSP00000386814
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InnateDB Gene
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IDBG-11615 (LSM5)
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Protein Structure
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Function |
Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA, thereby facilitating formation of the spliceosomal U4/U6 duplex formation in vitro.
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Subcellular Localization |
Nucleus {ECO:0000250}.
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Disease Associations |
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Tissue Specificity |
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Comments |
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Number of Interactions
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This gene and/or its encoded proteins are associated with 28 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated |
Total |
28
[view]
|
Protein-Protein |
25
[view]
|
Protein-DNA |
3
[view]
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Protein-RNA |
0
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DNA-DNA |
0
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RNA-RNA |
0
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DNA-RNA |
0
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Predicted by orthology |
Total |
1 [view]
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|
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Molecular Function |
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Biological Process |
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Cellular Component |
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PDB ID |
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InterPro |
IPR001163
Ribonucleoprotein LSM domain
IPR006649
Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920
Like-Sm (LSM) domain
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PFAM |
PF01423
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PRINTS |
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PIRSF |
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SMART |
SM00651
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TIGRFAMs |
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Modification |
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SwissProt |
Q9Y4Y9
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PhosphoSite |
PhosphoSite-Q9Y4Y9
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TrEMBL |
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UniProt Splice Variant |
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Entrez Gene |
23658
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UniGene |
Hs.424908
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RefSeq |
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HUGO |
HGNC:17162
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OMIM |
607285
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CCDS |
CCDS47571
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HPRD |
06285
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IMGT |
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EMBL |
AC018641
AF182291
AJ238097
BC005938
BF701546
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GenPept |
AAD56229
AAH05938
CAB45868
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