Version 5.4
Homo sapiens Protein: PCDH9
Summary
InnateDB Protein IDBP-36885.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PCDH9
Protein Name protocadherin 9
Synonyms
Species Homo sapiens
Ensembl Protein ENSP00000367096
InnateDB Gene IDBG-36883 (PCDH9)
Protein Structure
UniProt Annotation
Function Potential calcium-dependent cell-adhesion protein.
Subcellular Localization Cell membrane {ECO:0000250}; Single-pass type I membrane protein {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 3 experimentally validated interaction(s) in this database.
They are also associated with 1 interaction(s) predicted by orthology.
Experimentally validated
Total 3 [view]
Protein-Protein 3 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 1 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
Biological Process
GO:0007156 homophilic cell adhesion
GO:0030900 forebrain development
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030426 growth cone
GO:0044291 cell-cell contact zone
Protein Structure and Domains
PDB ID
InterPro IPR002126 Cadherin
IPR013164 Cadherin, N-terminal
IPR013585 Protocadherin
IPR015919 Cadherin-like
PFAM PF00028
PF08266
PF08374
PRINTS PR00205
PIRSF
SMART SM00112
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q9HC56
PhosphoSite PhosphoSite-Q9HC56
TrEMBL X5D7N0
UniProt Splice Variant
Entrez Gene 5101
UniGene Hs.654709
RefSeq NP_982354
HUGO HGNC:8661
OMIM 603581
CCDS CCDS9444
HPRD 04661
IMGT
EMBL AF169692 AL136999 AL138814 AL355173 AL603863 AL834258 BC136626 BC136627 BX537422 KJ534915
GenPept AAF89689 AAI36627 AAI36628 AHW56555 CAD38933 CAD97664 CAH72612 CAH72759 CAI12502 CAM13066 CAM13771 CAM17290 CAM17491

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca