InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Protein: COL20A1

Summary

InnateDB Protein

IDBP-380640.5

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

COL20A1

Protein Name

collagen, type XX, alpha 1

Synonyms

Species

Homo sapiens

Ensembl Protein

ENSP00000414753

InnateDB Gene

IDBG-85965 (COL20A1)

Protein Structure

UniProt Annotation

Function

Probable collagen protein.

Subcellular Localization

Secreted, extracellular space {ECO:0000305}.

Disease Associations

Tissue Specificity

High expression in heart, lung, liver, skeletal muscle, kidney, pancreas, spleen, testis, ovary, subthalamic nucleus and fetal liver. Weak expression in other tissues tested.

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.

Experimentally validated
Total	1 [view]
Protein-Protein	1 [view]
Protein-DNA	0
Protein-RNA	0
DNA-DNA	0
RNA-RNA	0
DNA-RNA	0

Gene Ontology

Molecular Function

Accession	GO Term
GO:0005515	protein binding

Biological Process

GO:0030198

extracellular matrix organization

Cellular Component

GO:0005576	extracellular region
GO:0005581	collagen trimer
GO:0005615	extracellular space
GO:0005788	endoplasmic reticulum lumen
GO:0031012	extracellular matrix

Protein Structure and Domains

PDB ID

InterPro

IPR001791 Laminin G domain
IPR002035 von Willebrand factor, type A
IPR003961 Fibronectin, type III
IPR008160 Collagen triple helix repeat
IPR008985 Concanavalin A-like lectin/glucanases superfamily

PFAM

PF00054
PF02210
PF00092
PF00041
PF01108
PF01391

PRINTS

PIRSF

SMART

SM00210
SM00282
SM00327
SM00060

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

Q9P218