Version 5.4
Homo sapiens Gene: COL20A1
Summary
InnateDB Gene IDBG-85965.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol COL20A1
Gene Name collagen, type XX, alpha 1
Synonyms
Species Homo sapiens
Ensembl Gene ENSG00000101203
Encoded Proteins
IDBP-85969
collagen, type XX, alpha 1
IDBP-380640
collagen, type XX, alpha 1
IDBP-380644
collagen, type XX, alpha 1
IDBP-380648
collagen, type XX, alpha 1
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary Currently no Entrez Summary Available. You might want to check the Summary Sections of the Orthologs.
Gene Information
Type Protein coding
Genomic Location Chromosome 20:63293186-63334851
Strand Forward strand
Band q13.33
Transcripts
ENST00000358894 ENSP00000351767
ENST00000422202 ENSP00000414753
ENST00000415763 ENSP00000410799
ENST00000455906 ENSP00000406345
ENST00000479501
ENST00000471582
ENST00000494913
ENST00000496810
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Gene Ontology

Molecular Function
Accession GO Term
GO:0005515 protein binding
Biological Process
GO:0030198 extracellular matrix organization
Cellular Component
GO:0005576 extracellular region
GO:0005581 collagen trimer
GO:0005615 extracellular space
GO:0005788 endoplasmic reticulum lumen
GO:0031012 extracellular matrix
Orthologs
Species
Mus musculus
Bos taurus
Gene ID
Gene Order
ENSMUSG00000016356
View Gene Order
ENSBTAG00000004582
Not yet available
Pathways
NETPATH
REACTOME
REACT_121139
Collagen biosynthesis and modifying enzymes pathway
REACT_118779
Extracellular matrix organization pathway
REACT_120729
Collagen formation pathway
KEGG
INOH
PID NCI
Cross-References
SwissProt
TrEMBL B7ZBI4
UniProt Splice Variant
Entrez Gene 57642
UniGene Hs.271285
RefSeq NM_020882
HUGO HGNC:14670
OMIM
CCDS CCDS46628
HPRD 17215
IMGT
EMBL AL121827
GenPept
RNA Seq Atlas 57642

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca