Homo sapiens Protein: SMARCA5 | |||||||||||||||||||||||||
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Summary | |||||||||||||||||||||||||
InnateDB Protein | IDBP-39366.6 | ||||||||||||||||||||||||
Last Modified | 2014-10-13 [Report errors or provide feedback] | ||||||||||||||||||||||||
Gene Symbol | SMARCA5 | ||||||||||||||||||||||||
Protein Name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 | ||||||||||||||||||||||||
Synonyms | hISWI; hSNF2H; ISWI; SNF2H; WCRF135; | ||||||||||||||||||||||||
Species | Homo sapiens | ||||||||||||||||||||||||
Ensembl Protein | ENSP00000283131 | ||||||||||||||||||||||||
InnateDB Gene | IDBG-39364 (SMARCA5) | ||||||||||||||||||||||||
Protein Structure | |||||||||||||||||||||||||
UniProt Annotation | |||||||||||||||||||||||||
Function | Helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity. Complexes containing SMARCA5 are capable of forming ordered nucleosome arrays on chromatin; this may require intact histone H4 tails. Also required for replication of pericentric heterochromatin in S-phase specifically in conjunction with BAZ1A. Probably plays a role in repression of polI dependent transcription of the rDNA locus, through the recruitment of the SIN3/HDAC1 corepressor complex to the rDNA promoter. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates the transcription of various genes, has a role in RNA polymerase I and RNA polymerase III transcription, mediates the histone H2AX phosphorylation at 'Tyr-142', and is involved in the maintenance of chromatin structures during DNA replication processes. Essential component of the NoRC (nucleolar remodeling complex) complex, a complex that mediates silencing of a fraction of rDNA by recruiting histone-modifying enzymes and DNA methyltransferases, leading to heterochromatin formation and transcriptional silencing. {ECO:0000269PubMed:10880450, ECO:0000269PubMed:11980720, ECO:0000269PubMed:12198550, ECO:0000269PubMed:12434153, ECO:0000269PubMed:12972596, ECO:0000269PubMed:15543136, ECO:0000269PubMed:16603771}. | ||||||||||||||||||||||||
Subcellular Localization | Nucleus {ECO:0000255PROSITE- ProRule:PRU00624, ECO:0000269PubMed:12434153}. | ||||||||||||||||||||||||
Disease Associations | |||||||||||||||||||||||||
Tissue Specificity | Ubiquitously expressed. | ||||||||||||||||||||||||
Comments | |||||||||||||||||||||||||
Interactions | |||||||||||||||||||||||||
Number of Interactions |
This gene and/or its encoded proteins are associated with 122 experimentally validated interaction(s) in this database.
They are also associated with 17 interaction(s) predicted by orthology.
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Gene Ontology | |||||||||||||||||||||||||
Molecular Function |
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Biological Process |
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Cellular Component |
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Protein Structure and Domains | |||||||||||||||||||||||||
PDB ID | |||||||||||||||||||||||||
InterPro |
IPR000330
SNF2-related IPR001005 SANT/Myb domain IPR001650 Helicase, C-terminal IPR006935 Helicase/UvrB domain IPR009057 Homeodomain-like IPR011545 DEAD/DEAH box helicase domain IPR014001 Helicase, superfamily 1/2, ATP-binding domain IPR015194 ISWI HAND domain IPR015195 SLIDE domain IPR021006 Histone deacetylase complex, subunit 2/3 IPR027417 P-loop containing nucleoside triphosphate hydrolase |
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PFAM |
PF00176
PF00249 PF00271 PF04851 PF00270 PF09110 PF09111 PF11496 |
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PRINTS | |||||||||||||||||||||||||
PIRSF | |||||||||||||||||||||||||
SMART |
SM00717
SM00490 SM00487 |
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TIGRFAMs | |||||||||||||||||||||||||
Post-translational Modifications | |||||||||||||||||||||||||
Modification | |||||||||||||||||||||||||
Cross-References | |||||||||||||||||||||||||
SwissProt | O60264 | ||||||||||||||||||||||||
PhosphoSite | PhosphoSite-O60264 | ||||||||||||||||||||||||
TrEMBL | Q4W5H1 | ||||||||||||||||||||||||
UniProt Splice Variant | |||||||||||||||||||||||||
Entrez Gene | 8467 | ||||||||||||||||||||||||
UniGene | Hs.724991 | ||||||||||||||||||||||||
RefSeq | NP_003592 | ||||||||||||||||||||||||
HUGO | HGNC:11101 | ||||||||||||||||||||||||
OMIM | 603375 | ||||||||||||||||||||||||
CCDS | CCDS3761 | ||||||||||||||||||||||||
HPRD | 04538 | ||||||||||||||||||||||||
IMGT | |||||||||||||||||||||||||
EMBL | AB010882 AC099396 AC104685 BC023144 | ||||||||||||||||||||||||
GenPept | AAH23144 AAY40920 AAY40965 BAA25173 | ||||||||||||||||||||||||