InnateDB: Systems Biology of the Innate Immune Response

Homo sapiens Protein: OPN1SW

Summary

InnateDB Protein

IDBP-39988.4

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

OPN1SW

Protein Name

opsin 1 (cone pigments), short-wave-sensitive

Synonyms

BCP; BOP; CBT;

Species

Homo sapiens

Ensembl Protein

ENSP00000249389

InnateDB Gene

IDBG-39986 (OPN1SW)

Protein Structure

UniProt Annotation

Function

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Subcellular Localization

Membrane; Multi-pass membrane protein.

Disease Associations

Tritan color blindness (CBT) [MIM:190900]: A disorder of vision characterized by a selective deficiency of blue spectral sensitivity. {ECO:0000269PubMed:1386496, ECO:0000269PubMed:1531728}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Tissue Specificity

The three color pigments are found in the cone photoreceptor cells.

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.

Gene Ontology

Molecular Function

Accession	GO Term
GO:0004872	receptor activity
GO:0004930	G-protein coupled receptor activity
GO:0009881	photoreceptor activity

Biological Process

GO:0001523	retinoid metabolic process
GO:0007165	signal transduction
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007601	visual perception
GO:0007602	phototransduction
GO:0007603	phototransduction, visible light
GO:0018298	protein-chromophore linkage

Cellular Component

GO:0001750	photoreceptor outer segment
GO:0005887	integral component of plasma membrane
GO:0016021	integral component of membrane
GO:0042622	photoreceptor outer segment membrane

Protein Structure and Domains

PDB ID

InterPro

IPR000276 G protein-coupled receptor, rhodopsin-like
IPR001521 Opsin, blue sensitive
IPR001760 Opsin
IPR017452 GPCR, rhodopsin-like, 7TM
IPR019426 7TM GPCR, serpentine receptor class v (Srv)
IPR019427 7TM GPCR, serpentine receptor class w (Srw)

PFAM

PF00001
PF10323
PF10324

PRINTS

PR00237
PR00574
PR00238

PIRSF

SMART

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

P03999