InnateDB Protein
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IDBP-47849.6
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Last Modified
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2014-10-13 [Report errors or provide feedback]
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Gene Symbol
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SMARCE1
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Protein Name
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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
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Synonyms
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BAF57;
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Species
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Homo sapiens
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Ensembl Protein
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ENSP00000323967
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InnateDB Gene
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IDBG-47847 (SMARCE1)
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Protein Structure
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Function |
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Required for the coactivation of estrogen responsive promoters by Swi/Snf complexes and the SRC/p160 family of histone acetyltransferases (HATs). Also specifically interacts with the CoREST corepressor resulting in repression of neuronal specific gene promoters in non-neuronal cells. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. {ECO:0000250, ECO:0000269PubMed:12837248}.
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Subcellular Localization |
Nucleus {ECO:0000255PROSITE- ProRule:PRU00267, ECO:0000269PubMed:12192000}.
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Disease Associations |
Note=Defects in SMARCE1 may be a cause of Coffin-Siris syndrome, a highly variable disease characterized by mental retardation associated with a broad spectrum of different clinical features.
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Tissue Specificity |
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Comments |
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Number of Interactions
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This gene and/or its encoded proteins are associated with 115 experimentally validated interaction(s) in this database.
They are also associated with 17 interaction(s) predicted by orthology.
Experimentally validated |
Total |
115
[view]
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Protein-Protein |
112
[view]
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Protein-DNA |
3
[view]
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Protein-RNA |
0
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DNA-DNA |
0
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RNA-RNA |
0
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DNA-RNA |
0
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Predicted by orthology |
Total |
17 [view]
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Molecular Function |
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Biological Process |
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Cellular Component |
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PDB ID |
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InterPro |
IPR009071
High mobility group box domain
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PFAM |
PF00505
PF09011
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PRINTS |
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PIRSF |
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SMART |
SM00398
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TIGRFAMs |
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Modification |
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SwissProt |
Q969G3
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PhosphoSite |
PhosphoSite-Q969G3
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TrEMBL |
J3QR61
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UniProt Splice Variant |
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Entrez Gene |
6605
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UniGene |
Hs.643780
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RefSeq |
NP_003070
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HUGO |
HGNC:11109
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OMIM |
603111
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CCDS |
CCDS11370
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HPRD |
04382
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IMGT |
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EMBL |
AC004585
AC073508
AF035262
AK001532
AK095047
AK294218
AK294666
BC007082
BC011017
BC063700
BT007176
CH471152
EU327017
EU327018
EU327019
EU327020
EU327021
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GenPept |
AAC04509
AAH07082
AAH11017
AAH63700
AAP35840
ACA81391
ACA81392
ACA81393
ACA81394
ACA81395
BAG50933
BAG52975
BAG57525
BAG57834
EAW60670
EAW60671
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