Version 5.4
Mus musculus Protein: Prpf40b
Summary
InnateDB Protein IDBP-537311.4
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prpf40b
Protein Name PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Synonyms 2610317D23Rik; Hypc;
Species Mus musculus
Ensembl Protein ENSMUSP00000115869
InnateDB Gene IDBG-182570 (Prpf40b)
Protein Structure
UniProt Annotation
Function May be involved in pre-mRNA splicing. {ECO:0000250}.
Subcellular Localization Nucleus speckle {ECO:0000250}.
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006397 mRNA processing
GO:0008150 biological_process
GO:0008380 RNA splicing
Cellular Component
GO:0005575 cellular_component
GO:0016607 nuclear speck
Protein Structure and Domains
PDB ID MGI:1925583
InterPro IPR001202 WW domain
IPR002713 FF domain
PFAM PF00397
PF01846
PRINTS
PIRSF
SMART SM00456
SM00441
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q80W14
PhosphoSite PhosphoSite-Q80W14
TrEMBL D3Z1Y9
UniProt Splice Variant
Entrez Gene 54614
UniGene Mm.407176
RefSeq NP_061256
MGI ID
MGI Symbol Prpf40b
OMIM
CCDS CCDS27818
HPRD
IMGT
EMBL AC161198 AF135440 AK019183 AK140075 BC051961 BC082994
GenPept AAD39464 AAH51961 AAH82994 BAB31591 BAE24230

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca