Version 5.4
Mus musculus Gene: Prpf40b
Summary
InnateDB Gene IDBG-182570.6
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Prpf40b
Gene Name PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Synonyms 2610317D23Rik; Hypc
Species Mus musculus
Ensembl Gene ENSMUSG00000023007
Encoded Proteins
IDBP-182574
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-400888
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-536074
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-540116
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-537311
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-538973
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-534466
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-536782
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
IDBP-532178
PRP40 pre-mRNA processing factor 40 homolog B (yeast)
Protein Structure
Useful resources Stemformatics EHFPI ImmGen
Entrez Gene
Summary This gene does not have any Entrez summary - the following is the summary from its human ortholog ENSG00000110844:
This gene encodes a WW-domain containing protein similar to yeast splicing factor PRP40. This protein has been shown to interact with Huntingtin and MeCP2. Alternative splicing results in different transcriptional variants. [provided by RefSeq, Jun 2012]
This gene encodes a WW-domain containing protein similar to yeast splicing factor PRP40. This protein has been shown to interact with Huntingtin and methyl CpG binding protein 2 (MeCP2). Alternative splicing results in different transcript variants. [provided by RefSeq, Aug 2014]
Gene Information
Type Protein coding
Genomic Location Chromosome 15:99295087-99317018
Strand Forward strand
Band F1
Transcripts
ENSMUST00000023745 ENSMUSP00000023745
ENSMUST00000118287 ENSMUSP00000113282
ENSMUST00000128352 ENSMUSP00000119556
ENSMUST00000150641
ENSMUST00000130575
ENSMUST00000138036
ENSMUST00000140806 ENSMUSP00000121260
ENSMUST00000145482 ENSMUSP00000115869
ENSMUST00000136980 ENSMUSP00000122649
ENSMUST00000139330
ENSMUST00000153692
ENSMUST00000124275
ENSMUST00000134034 ENSMUSP00000120030
ENSMUST00000150636 ENSMUSP00000119295
ENSMUST00000126955 ENSMUSP00000123527
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0006397 mRNA processing
GO:0008150 biological_process
GO:0008380 RNA splicing
Cellular Component
GO:0005575 cellular_component
GO:0016607 nuclear speck
Orthologs
Species
Homo sapiens
Bos taurus
Gene ID
Gene Order
ENSG00000110844
View Gene Order
ENSBTAG00000016589
Not yet available
Pathways
NETPATH
REACTOME
KEGG
mmu03040
Spliceosome pathway
INOH
PID NCI
Pathway Predictions based on Human Orthology Data
NETPATH
REACTOME
KEGG
hsa03040
Spliceosome pathway
INOH
PID NCI
Cross-References
SwissProt
TrEMBL D3Z1Y9
UniProt Splice Variant
Entrez Gene 54614
UniGene Mm.358668 Mm.407176
RefSeq NM_018786 XM_006521177 XM_006521178 XM_006521179 XM_006521180 XM_006521181 XM_006521182 XM_006521183 XM_006521184 XM_006521186 XM_006521187 XM_006521188 XM_006521189 XM_006521190
OMIM
CCDS CCDS27818
HPRD
IMGT
MGI ID MGI:1925583
MGI Symbol Prpf40b
EMBL AC161198
GenPept
RNA Seq Atlas 54614

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca