Version 5.4
Mus musculus Protein: Pcdh1
Summary
InnateDB Protein IDBP-542822.3
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol Pcdh1
Protein Name protocadherin 1
Synonyms 2010005A06Rik; AI585920;
Species Mus musculus
Ensembl Protein ENSMUSP00000125576
InnateDB Gene IDBG-141384 (Pcdh1)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 1 experimentally validated interaction(s) in this database.
They are also associated with 5 interaction(s) predicted by orthology.
Experimentally validated
Total 1 [view]
Protein-Protein 1 [view]
Protein-DNA 0
Protein-RNA 0
DNA-DNA 0
RNA-RNA 0
DNA-RNA 0
Predicted by orthology
Total 5 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0005509 calcium ion binding
GO:0005515 protein binding
Biological Process
GO:0007156 homophilic cell adhesion
GO:0016339 calcium-dependent cell-cell adhesion
Cellular Component
GO:0005887 integral component of plasma membrane
GO:0005911 cell-cell junction
GO:0016020 membrane
Protein Structure and Domains
PDB ID MGI:104692
InterPro IPR002126 Cadherin
IPR013585 Protocadherin
IPR015919 Cadherin-like
PFAM PF00028
PF08374
PRINTS PR00205
PIRSF
SMART SM00112
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-Q2TJI9
TrEMBL Q2TJI9
UniProt Splice Variant
Entrez Gene 75599
UniGene Mm.458851
RefSeq XP_006526383
MGI ID
MGI Symbol Pcdh1
OMIM
CCDS
HPRD
IMGT
EMBL AC133646 AY861416
GenPept AAX56106

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca