InnateDB: Systems Biology of the Innate Immune Response

Mus musculus Protein: RBM4

Summary

InnateDB Protein

IDBP-619833.2

Last Modified

2014-10-13 [Report errors or provide feedback]

Gene Symbol

RBM4

Protein Name

RNA binding motif protein 14

Synonyms

1300007E16Rik; 4921506I22Rik; lark; Lark1; Mlark; p16; p16K; PSP2; Rbm4a; Sytip;

Species

Mus musculus

Ensembl Protein

ENSMUSP00000128810

InnateDB Gene

IDBG-702473 (RBM4)

Protein Structure

UniProt Annotation

Function

Subcellular Localization

Disease Associations

Tissue Specificity

Comments

Interactions

Number of Interactions

This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 49 interaction(s) predicted by orthology.

Predicted by orthology
Total	49 [view]

Gene Ontology

Molecular Function

Accession	GO Term
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003730	mRNA 3'-UTR binding
GO:0008270	zinc ion binding
GO:0035198	miRNA binding
GO:0036002	pre-mRNA binding
GO:0097157	pre-mRNA intronic binding
GO:0097158	pre-mRNA intronic pyrimidine-rich binding

Biological Process

GO:0000381	regulation of alternative mRNA splicing, via spliceosome
GO:0002190	cap-independent translational initiation
GO:0002192	IRES-dependent translational initiation
GO:0006397	mRNA processing
GO:0008380	RNA splicing
GO:0017148	negative regulation of translation
GO:0030154	cell differentiation
GO:0032055	negative regulation of translation in response to stress
GO:0035278	negative regulation of translation involved in gene silencing by miRNA
GO:0043153	entrainment of circadian clock by photoperiod
GO:0045947	negative regulation of translational initiation
GO:0046685	response to arsenic-containing substance
GO:0046822	regulation of nucleocytoplasmic transport
GO:0051149	positive regulation of muscle cell differentiation
GO:0051403	stress-activated MAPK cascade
GO:0097167	circadian regulation of translation

Cellular Component

GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0010494	cytoplasmic stress granule
GO:0016607	nuclear speck
GO:0048471	perinuclear region of cytoplasm

Protein Structure and Domains

PDB ID

MGI:5439461

InterPro

IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type

PFAM

PF00076
PF00098

PRINTS

PIRSF

SMART

SM00360
SM00343

TIGRFAMs

Post-translational Modifications

Modification

Cross-References

SwissProt

PhosphoSite

PhosphoSite-

TrEMBL

J3QPA9

UniProt Splice Variant

Entrez Gene

56275

UniGene

Mm.447455

RefSeq

MGI ID

MGI Symbol

Gm21992

OMIM

CCDS

HPRD

IMGT

EMBL

AC141437 AC147618 AK049659 AK087488 BC144949 CH466612 U89506

GenPept

AAC53171 AAI44950 BAC33862 BAC39895 EDL33060