InnateDB Protein
|
IDBP-623005.2
|
Last Modified
|
2014-10-13 [Report errors or provide feedback]
|
Gene Symbol
|
Sdc1
|
Protein Name
|
syndecan 1
|
Synonyms
|
AA408134; AA409076; CD138; Sstn; syn-1; Synd; Synd1;
|
Species
|
Mus musculus
|
Ensembl Protein
|
ENSMUSP00000131491
|
InnateDB Gene
|
IDBG-128466 (Sdc1)
|
Protein Structure
|
|
Function |
Cell surface proteoglycan that bears both heparan sulfate and chondroitin sulfate and that links the cytoskeleton to the interstitial matrix.
|
Subcellular Localization |
Membrane; Single-pass type I membrane protein. Secreted. Note=Shedding of the ectodomain produces a soluble form.
|
Disease Associations |
|
Tissue Specificity |
|
Comments |
|
Number of Interactions
|
This gene and/or its encoded proteins are associated with 4 experimentally validated interaction(s) in this database.
They are also associated with 13 interaction(s) predicted by orthology.
Experimentally validated |
Total |
4
[view]
|
Protein-Protein |
3
[view]
|
Protein-DNA |
1
[view]
|
Protein-RNA |
0
|
DNA-DNA |
0
|
RNA-RNA |
0
|
DNA-RNA |
0
|
|
Predicted by orthology |
Total |
13 [view]
|
|
|
Molecular Function |
|
Biological Process |
|
Cellular Component |
|
PDB ID |
MGI:1349162
|
InterPro |
IPR003585
Neurexin/syndecan/glycophorin C
IPR027789
Syndecan/Neurexin domain
|
PFAM |
PF01034
|
PRINTS |
|
PIRSF |
|
SMART |
SM00294
|
TIGRFAMs |
|
Modification |
|
SwissProt |
P18828
|
PhosphoSite |
PhosphoSite-P18828
|
TrEMBL |
Q3V1F2
|
UniProt Splice Variant |
|
Entrez Gene |
20969
|
UniGene |
Mm.436389
|
RefSeq |
|
MGI ID |
|
MGI Symbol |
Sdc1
|
OMIM |
|
CCDS |
CCDS25803
|
HPRD |
|
IMGT |
|
EMBL |
AF134897
AK132236
AK132491
AK143529
AK162092
BC010560
CH466582
L11565
X15487
Z22532
|
GenPept |
AAA40159
AAD42345
AAH10560
BAE21050
BAE21199
BAE25420
BAE36718
CAA33514
CAA80254
EDK98410
|
|
|