Version 5.4
Bos taurus Protein: PRDM16
Summary
InnateDB Protein IDBP-686520.2
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol PRDM16
Protein Name PR domain containing 16
Synonyms
Species Bos taurus
Ensembl Protein ENSBTAP00000025245
InnateDB Gene IDBG-634734 (PRDM16)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 7 interaction(s) predicted by orthology.
Predicted by orthology
Total 7 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0046332 SMAD binding
GO:0046872 metal ion binding
Biological Process
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0022008 neurogenesis
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 negative regulation of granulocyte differentiation
GO:0035019 somatic stem cell maintenance
GO:0043457 regulation of cellular respiration
GO:0043586 tongue development
GO:0050872 white fat cell differentiation
GO:0050873 brown fat cell differentiation
GO:0060021 palate development
Cellular Component
GO:0005634 nucleus
GO:0017053 transcriptional repressor complex
Protein Structure and Domains
PDB ID
InterPro IPR001214 SET domain
IPR003656 Zinc finger, BED-type
IPR007087 Zinc finger, C2H2
IPR015880 Zinc finger, C2H2-like
PFAM PF00856
PF02892
PF00096
PRINTS
PIRSF
SMART SM00317
SM00614
SM00355
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt
PhosphoSite PhosphoSite-
TrEMBL F1MTF1
UniProt Splice Variant
Entrez Gene 100137803
UniGene Bt.86636
RefSeq XP_002694224
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL DAAA02043191 DAAA02043192 FJ812033
GenPept ACZ55140

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca