Version 5.4
Bos taurus Protein: SMARCAL1
Summary
InnateDB Protein IDBP-696310.2
Last Modified 2014-10-13 [Report errors or provide feedback]
Gene Symbol SMARCAL1
Protein Name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Synonyms
Species Bos taurus
Ensembl Protein ENSBTAP00000005013
InnateDB Gene IDBG-643727 (SMARCAL1)
Protein Structure
UniProt Annotation
Function
Subcellular Localization
Disease Associations
Tissue Specificity
Comments
Interactions
Number of Interactions This gene and/or its encoded proteins are associated with 0 experimentally validated interaction(s) in this database.
They are also associated with 3 interaction(s) predicted by orthology.
Predicted by orthology
Total 3 [view]
Gene Ontology

Molecular Function
Accession GO Term
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008094 DNA-dependent ATPase activity
GO:0016787 hydrolase activity
GO:0036310 annealing helicase activity
Biological Process
GO:0000733 DNA strand renaturation
GO:0006200 ATP catabolic process
GO:0006259 DNA metabolic process
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006974 cellular response to DNA damage stimulus
GO:0016568 chromatin modification
GO:0031297 replication fork processing
Cellular Component
GO:0005634 nucleus
GO:0005662 DNA replication factor A complex
GO:0035861 site of double-strand break
Protein Structure and Domains
PDB ID
InterPro IPR000330 SNF2-related
IPR001650 Helicase, C-terminal
IPR010003 HARP domain
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
PFAM PF00176
PF00271
PF07443
PRINTS
PIRSF
SMART SM00490
SM00487
TIGRFAMs
Post-translational Modifications
Modification
Cross-References
SwissProt Q9TTA5
PhosphoSite PhosphoSite-
TrEMBL
UniProt Splice Variant
Entrez Gene 338072
UniGene
RefSeq NP_788839
HUGO
OMIM
CCDS
HPRD
IMGT
EMBL AF173643 DAAA02005900
GenPept AAF22285

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1) 

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca